Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23436 | 3' | -65.8 | NC_005259.1 | + | 63717 | 0.68 | 0.228591 |
Target: 5'- gGGaucgGGGCCugCgcaGCCGGUAgcgacaucuCGGCGGg -3' miRNA: 3'- gCCg---CCCGGugG---CGGCCAU---------GCCGCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 54493 | 0.68 | 0.223198 |
Target: 5'- ---aGGGUCAUCGgCGGgcAUGGCGGCg -3' miRNA: 3'- gccgCCCGGUGGCgGCCa-UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 29112 | 0.68 | 0.223198 |
Target: 5'- -uGCGGaCC-CUGCUGGUgagcGCGGCGGUa -3' miRNA: 3'- gcCGCCcGGuGGCGGCCA----UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 27367 | 0.68 | 0.223198 |
Target: 5'- gGGCuuGGuGCC-CgGCaCGGUGacCGGCGGCg -3' miRNA: 3'- gCCG--CC-CGGuGgCG-GCCAU--GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 26415 | 0.68 | 0.223198 |
Target: 5'- gCGGCGGuGCCgccguagaacgcACCGCCGa-GCGGgCGGg -3' miRNA: 3'- -GCCGCC-CGG------------UGGCGGCcaUGCC-GCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 60530 | 0.68 | 0.222664 |
Target: 5'- uGGcCGGGCCgggacgcaGCCGCucgucggcaugccCGGUGCcgacggucaGGCGGCc -3' miRNA: 3'- gCC-GCCCGG--------UGGCG-------------GCCAUG---------CCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 54158 | 0.68 | 0.217913 |
Target: 5'- cCGGCgauGGGCaUACCGCaacuguugaucuUGGUggcccucagGCGGCGGCc -3' miRNA: 3'- -GCCG---CCCG-GUGGCG------------GCCA---------UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 58775 | 0.68 | 0.217913 |
Target: 5'- -uGCGGGCgCugUgcGCCGGUcgaGGCGGUg -3' miRNA: 3'- gcCGCCCG-GugG--CGGCCAug-CCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 32906 | 0.68 | 0.217913 |
Target: 5'- gGGUGaGCCAcccggcCCGCuCGGgcGCGGCGGUa -3' miRNA: 3'- gCCGCcCGGU------GGCG-GCCa-UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 4275 | 0.68 | 0.21739 |
Target: 5'- gGGCGGcugcgcuGCCACgaGCaCGGacCGGCGGCc -3' miRNA: 3'- gCCGCC-------CGGUGg-CG-GCCauGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 41682 | 0.68 | 0.214794 |
Target: 5'- gCGuGCGuGGCCACCGCgcacacaGGcaugcagccgccgcaUAcCGGCGGCg -3' miRNA: 3'- -GC-CGC-CCGGUGGCGg------CC---------------AU-GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 2041 | 0.68 | 0.212735 |
Target: 5'- gCGGUGGGCgguCACCGgcaCCGagacACGGCGGUu -3' miRNA: 3'- -GCCGCCCG---GUGGC---GGCca--UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 28219 | 0.68 | 0.212735 |
Target: 5'- aCGGuCGugccGCCACCGUCGG--CGGCGGg -3' miRNA: 3'- -GCC-GCc---CGGUGGCGGCCauGCCGCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 37467 | 0.69 | 0.202206 |
Target: 5'- uGGCuGGCCacGCCGCCGuUGgcugacccaccccCGGCGGUg -3' miRNA: 3'- gCCGcCCGG--UGGCGGCcAU-------------GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 27071 | 0.69 | 0.193073 |
Target: 5'- aCGGCGa--CAUCGCCGacauucUGCGGCGGCu -3' miRNA: 3'- -GCCGCccgGUGGCGGCc-----AUGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 61764 | 0.69 | 0.185664 |
Target: 5'- gCGGCGGcaaUCACCGCCGcauucugcacacCGGCGGCc -3' miRNA: 3'- -GCCGCCc--GGUGGCGGCcau---------GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 164 | 0.69 | 0.183851 |
Target: 5'- cCGGCGGGguccggcaCCACCGaCuCGGUcaucuaugGCGcGUGGCg -3' miRNA: 3'- -GCCGCCC--------GGUGGC-G-GCCA--------UGC-CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 55029 | 0.69 | 0.183401 |
Target: 5'- uCGGCacGGGCUGCCGa-GGUGCuugccucGGUGGCa -3' miRNA: 3'- -GCCG--CCCGGUGGCggCCAUG-------CCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 51118 | 0.7 | 0.179388 |
Target: 5'- cCGGCaGGCCaucagaucACCGUCGG---GGCGGCc -3' miRNA: 3'- -GCCGcCCGG--------UGGCGGCCaugCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 26799 | 0.7 | 0.179388 |
Target: 5'- -aGCGccGCCGCCcgguugGCCGGUAcCGGCGGUg -3' miRNA: 3'- gcCGCc-CGGUGG------CGGCCAU-GCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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