Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23436 | 3' | -65.8 | NC_005259.1 | + | 64780 | 0.67 | 0.28676 |
Target: 5'- uCGGCGGcCCGCUgcgacuggcuguguGCCucGGccuCGGCGGCa -3' miRNA: 3'- -GCCGCCcGGUGG--------------CGG--CCau-GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 65857 | 0.67 | 0.282197 |
Target: 5'- uGGU-GGCCuCCGucugccCCGGUGgGGCGGUc -3' miRNA: 3'- gCCGcCCGGuGGC------GGCCAUgCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 3105 | 0.67 | 0.28155 |
Target: 5'- uGaGCGGGCggccauugcgcggCACCGUgGGcaGCGGaCGGCa -3' miRNA: 3'- gC-CGCCCG-------------GUGGCGgCCa-UGCC-GCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 47674 | 0.67 | 0.27578 |
Target: 5'- uGGCcuuGGCCACCuuuugcauGcCCGGUugGaugcGCGGCa -3' miRNA: 3'- gCCGc--CCGGUGG--------C-GGCCAugC----CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 61053 | 0.67 | 0.269479 |
Target: 5'- gGGCGGcUCACCuuguGCCGGgcauCGGCauaGGCg -3' miRNA: 3'- gCCGCCcGGUGG----CGGCCau--GCCG---CCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 13221 | 0.67 | 0.268856 |
Target: 5'- gCGGUGGGCCucgACCgGCCaccGUGagggccgagcaccCGGCGGUa -3' miRNA: 3'- -GCCGCCCGG---UGG-CGGc--CAU-------------GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 56258 | 0.67 | 0.263295 |
Target: 5'- uCGGCGGccuugagcGCCGCCGCCcGGccCGuauCGGCa -3' miRNA: 3'- -GCCGCC--------CGGUGGCGG-CCauGCc--GCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 10773 | 0.67 | 0.263295 |
Target: 5'- gGGCGGGUCAUCGa-GGUG-GGCcGCg -3' miRNA: 3'- gCCGCCCGGUGGCggCCAUgCCGcCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 65110 | 0.67 | 0.263295 |
Target: 5'- aCGGUcaGuGcGUCACCGUCGGcgcacCGGCGGCc -3' miRNA: 3'- -GCCG--C-C-CGGUGGCGGCCau---GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 40457 | 0.67 | 0.263295 |
Target: 5'- cCGGUGuGGUugacgUACUGCCGGgcCGcGCGGUu -3' miRNA: 3'- -GCCGC-CCG-----GUGGCGGCCauGC-CGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 61594 | 0.67 | 0.263295 |
Target: 5'- gCGGUGGGCCGgUGg-GGU-CGGCGGg -3' miRNA: 3'- -GCCGCCCGGUgGCggCCAuGCCGCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 45308 | 0.67 | 0.262683 |
Target: 5'- cCGGUGacgccgaGGCCGCCGCCGaacUGC-GUGGCc -3' miRNA: 3'- -GCCGC-------CCGGUGGCGGCc--AUGcCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 63573 | 0.67 | 0.251864 |
Target: 5'- aCGaGCGGGauauaCGCCGCCuGGcuguucucguccuccAUGGCGGCc -3' miRNA: 3'- -GC-CGCCCg----GUGGCGG-CCa--------------UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 23258 | 0.68 | 0.245435 |
Target: 5'- gGGCGguGGCCACCaugagcaccaaGaCCGGgcGCGGUGGUu -3' miRNA: 3'- gCCGC--CCGGUGG-----------C-GGCCa-UGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 9106 | 0.68 | 0.245435 |
Target: 5'- gGGCGGGgaacucaaucCCACgCGCCccGGUACgGGCaGCc -3' miRNA: 3'- gCCGCCC----------GGUG-GCGG--CCAUG-CCGcCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 16226 | 0.68 | 0.245435 |
Target: 5'- aGGUGGGCCgaacgcACC-CCGGUGCuGC-GCa -3' miRNA: 3'- gCCGCCCGG------UGGcGGCCAUGcCGcCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 58918 | 0.68 | 0.239709 |
Target: 5'- uCGGCGGucuuGUCGuCgGCgGGcGCGGUGGCa -3' miRNA: 3'- -GCCGCC----CGGU-GgCGgCCaUGCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 42473 | 0.68 | 0.230779 |
Target: 5'- aCGGCGaGGCC-CgGCCcGUAgagccgugacccgucCGGCGGUg -3' miRNA: 3'- -GCCGC-CCGGuGgCGGcCAU---------------GCCGCCG- -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 63717 | 0.68 | 0.228591 |
Target: 5'- gGGaucgGGGCCugCgcaGCCGGUAgcgacaucuCGGCGGg -3' miRNA: 3'- gCCg---CCCGGugG---CGGCCAU---------GCCGCCg -5' |
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23436 | 3' | -65.8 | NC_005259.1 | + | 50256 | 0.68 | 0.228591 |
Target: 5'- uGGCcaacGGGCUACuCGCUGucguCGGUGGCg -3' miRNA: 3'- gCCG----CCCGGUG-GCGGCcau-GCCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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