Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23443 | 5' | -54.7 | NC_005259.1 | + | 8997 | 0.65 | 0.81737 |
Target: 5'- gCGACGGCAgCCGCcucgucACGGGUcagacguACGCGGUg -3' miRNA: 3'- -GUUGUCGU-GGCGc-----UGCUCG-------UGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 41671 | 0.66 | 0.809001 |
Target: 5'- gGAUcuGCACCGCGuGCGuggccaccgcGCACACAGg -3' miRNA: 3'- gUUGu-CGUGGCGC-UGCu---------CGUGUGUCg -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 33263 | 0.66 | 0.809001 |
Target: 5'- -cGCAGCGCCGauGCu-GCGCACGuGCc -3' miRNA: 3'- guUGUCGUGGCgcUGcuCGUGUGU-CG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 41996 | 0.66 | 0.79953 |
Target: 5'- cCGGCGGUgaggaccacACCGUGGCGAuCACGCAc- -3' miRNA: 3'- -GUUGUCG---------UGGCGCUGCUcGUGUGUcg -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 7407 | 0.66 | 0.79953 |
Target: 5'- gCAACGGCauccucgucGCCGuCGGCGGugcccGCGCcgcaugGCAGCg -3' miRNA: 3'- -GUUGUCG---------UGGC-GCUGCU-----CGUG------UGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 50529 | 0.66 | 0.79953 |
Target: 5'- uCGAC-GCGCuCGCcucgGGCGAGgaaacCGCACGGCa -3' miRNA: 3'- -GUUGuCGUG-GCG----CUGCUC-----GUGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 36229 | 0.66 | 0.798574 |
Target: 5'- ---gAGCACCuuggccaGCG-CGAGCGCcugcgucgGCAGCg -3' miRNA: 3'- guugUCGUGG-------CGCuGCUCGUG--------UGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 19196 | 0.66 | 0.789887 |
Target: 5'- uCGACAGCgaGCU-CGugGuGCGgGCGGCg -3' miRNA: 3'- -GUUGUCG--UGGcGCugCuCGUgUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 26432 | 0.66 | 0.789887 |
Target: 5'- gAAC-GCACCGC--CGAGCGgGCGGg -3' miRNA: 3'- gUUGuCGUGGCGcuGCUCGUgUGUCg -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 26966 | 0.66 | 0.789887 |
Target: 5'- -cGCAGCGCCGUGcCGA--ACuCGGCg -3' miRNA: 3'- guUGUCGUGGCGCuGCUcgUGuGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 21023 | 0.66 | 0.789887 |
Target: 5'- cCGGCAGCugACCGaUGACcGGCGCGCGu- -3' miRNA: 3'- -GUUGUCG--UGGC-GCUGcUCGUGUGUcg -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 30697 | 0.66 | 0.786962 |
Target: 5'- aGGCAGCacgagcguguuguuGCCGcCGACGcGCcGCACgAGCg -3' miRNA: 3'- gUUGUCG--------------UGGC-GCUGCuCG-UGUG-UCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 25965 | 0.66 | 0.780082 |
Target: 5'- cCGAC-GC-CUGCGAUGAGacCGgGCAGCg -3' miRNA: 3'- -GUUGuCGuGGCGCUGCUC--GUgUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 3513 | 0.66 | 0.780082 |
Target: 5'- -uGCGcCGCCGCGuucaACGGGCACgacaccgaccACAGCc -3' miRNA: 3'- guUGUcGUGGCGC----UGCUCGUG----------UGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 32555 | 0.66 | 0.77711 |
Target: 5'- ---uGGcCGCCcCGGCGAGCGCggggauagcguuggGCAGCg -3' miRNA: 3'- guugUC-GUGGcGCUGCUCGUG--------------UGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 59113 | 0.66 | 0.774126 |
Target: 5'- --uCAGCACgCGCGGCaucgagcagagcgucGAGCucgGCAGCg -3' miRNA: 3'- guuGUCGUG-GCGCUG---------------CUCGug-UGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 47251 | 0.66 | 0.770126 |
Target: 5'- uCGAcCAGCGCUcgGUGACGcguuccAGCGCACcgAGCa -3' miRNA: 3'- -GUU-GUCGUGG--CGCUGC------UCGUGUG--UCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 41638 | 0.66 | 0.770126 |
Target: 5'- uGGCGGUGCCGgucuGCGGGCGCuCGGUg -3' miRNA: 3'- gUUGUCGUGGCgc--UGCUCGUGuGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 56339 | 0.67 | 0.76003 |
Target: 5'- cCGACuuccucuGCGuuGCccuCGGGCACGCGGUa -3' miRNA: 3'- -GUUGu------CGUggCGcu-GCUCGUGUGUCG- -5' |
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23443 | 5' | -54.7 | NC_005259.1 | + | 64756 | 0.67 | 0.76003 |
Target: 5'- -cACcGCGCCucGCGACGGuGCGCcuCGGCg -3' miRNA: 3'- guUGuCGUGG--CGCUGCU-CGUGu-GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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