miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23443 5' -54.7 NC_005259.1 + 8997 0.65 0.81737
Target:  5'- gCGACGGCAgCCGCcucgucACGGGUcagacguACGCGGUg -3'
miRNA:   3'- -GUUGUCGU-GGCGc-----UGCUCG-------UGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 41671 0.66 0.809001
Target:  5'- gGAUcuGCACCGCGuGCGuggccaccgcGCACACAGg -3'
miRNA:   3'- gUUGu-CGUGGCGC-UGCu---------CGUGUGUCg -5'
23443 5' -54.7 NC_005259.1 + 33263 0.66 0.809001
Target:  5'- -cGCAGCGCCGauGCu-GCGCACGuGCc -3'
miRNA:   3'- guUGUCGUGGCgcUGcuCGUGUGU-CG- -5'
23443 5' -54.7 NC_005259.1 + 41996 0.66 0.79953
Target:  5'- cCGGCGGUgaggaccacACCGUGGCGAuCACGCAc- -3'
miRNA:   3'- -GUUGUCG---------UGGCGCUGCUcGUGUGUcg -5'
23443 5' -54.7 NC_005259.1 + 7407 0.66 0.79953
Target:  5'- gCAACGGCauccucgucGCCGuCGGCGGugcccGCGCcgcaugGCAGCg -3'
miRNA:   3'- -GUUGUCG---------UGGC-GCUGCU-----CGUG------UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 50529 0.66 0.79953
Target:  5'- uCGAC-GCGCuCGCcucgGGCGAGgaaacCGCACGGCa -3'
miRNA:   3'- -GUUGuCGUG-GCG----CUGCUC-----GUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 36229 0.66 0.798574
Target:  5'- ---gAGCACCuuggccaGCG-CGAGCGCcugcgucgGCAGCg -3'
miRNA:   3'- guugUCGUGG-------CGCuGCUCGUG--------UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 19196 0.66 0.789887
Target:  5'- uCGACAGCgaGCU-CGugGuGCGgGCGGCg -3'
miRNA:   3'- -GUUGUCG--UGGcGCugCuCGUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 26432 0.66 0.789887
Target:  5'- gAAC-GCACCGC--CGAGCGgGCGGg -3'
miRNA:   3'- gUUGuCGUGGCGcuGCUCGUgUGUCg -5'
23443 5' -54.7 NC_005259.1 + 26966 0.66 0.789887
Target:  5'- -cGCAGCGCCGUGcCGA--ACuCGGCg -3'
miRNA:   3'- guUGUCGUGGCGCuGCUcgUGuGUCG- -5'
23443 5' -54.7 NC_005259.1 + 21023 0.66 0.789887
Target:  5'- cCGGCAGCugACCGaUGACcGGCGCGCGu- -3'
miRNA:   3'- -GUUGUCG--UGGC-GCUGcUCGUGUGUcg -5'
23443 5' -54.7 NC_005259.1 + 30697 0.66 0.786962
Target:  5'- aGGCAGCacgagcguguuguuGCCGcCGACGcGCcGCACgAGCg -3'
miRNA:   3'- gUUGUCG--------------UGGC-GCUGCuCG-UGUG-UCG- -5'
23443 5' -54.7 NC_005259.1 + 25965 0.66 0.780082
Target:  5'- cCGAC-GC-CUGCGAUGAGacCGgGCAGCg -3'
miRNA:   3'- -GUUGuCGuGGCGCUGCUC--GUgUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 3513 0.66 0.780082
Target:  5'- -uGCGcCGCCGCGuucaACGGGCACgacaccgaccACAGCc -3'
miRNA:   3'- guUGUcGUGGCGC----UGCUCGUG----------UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 32555 0.66 0.77711
Target:  5'- ---uGGcCGCCcCGGCGAGCGCggggauagcguuggGCAGCg -3'
miRNA:   3'- guugUC-GUGGcGCUGCUCGUG--------------UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 59113 0.66 0.774126
Target:  5'- --uCAGCACgCGCGGCaucgagcagagcgucGAGCucgGCAGCg -3'
miRNA:   3'- guuGUCGUG-GCGCUG---------------CUCGug-UGUCG- -5'
23443 5' -54.7 NC_005259.1 + 47251 0.66 0.770126
Target:  5'- uCGAcCAGCGCUcgGUGACGcguuccAGCGCACcgAGCa -3'
miRNA:   3'- -GUU-GUCGUGG--CGCUGC------UCGUGUG--UCG- -5'
23443 5' -54.7 NC_005259.1 + 41638 0.66 0.770126
Target:  5'- uGGCGGUGCCGgucuGCGGGCGCuCGGUg -3'
miRNA:   3'- gUUGUCGUGGCgc--UGCUCGUGuGUCG- -5'
23443 5' -54.7 NC_005259.1 + 56339 0.67 0.76003
Target:  5'- cCGACuuccucuGCGuuGCccuCGGGCACGCGGUa -3'
miRNA:   3'- -GUUGu------CGUggCGcu-GCUCGUGUGUCG- -5'
23443 5' -54.7 NC_005259.1 + 64756 0.67 0.76003
Target:  5'- -cACcGCGCCucGCGACGGuGCGCcuCGGCg -3'
miRNA:   3'- guUGuCGUGG--CGCUGCU-CGUGu-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.