miRNA display CGI


Results 41 - 46 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2345 5' -58.5 NC_001416.1 + 18050 0.69 0.357652
Target:  5'- uCCGUCAgcucgacuuuuuCCAGCAGCUCCuuGCCGAgaUGGg -3'
miRNA:   3'- -GGCGGU------------GGUUGUCGGGG--CGGUU--ACCg -5'
2345 5' -58.5 NC_001416.1 + 11905 0.69 0.349337
Target:  5'- gCCGCCGCCAuCAGCguguuguaaUCCGCCu---GCa -3'
miRNA:   3'- -GGCGGUGGUuGUCG---------GGGCGGuuacCG- -5'
2345 5' -58.5 NC_001416.1 + 9933 0.7 0.317473
Target:  5'- aUCGCCACCAGaaacGCgCCGguuCUGAUGGCg -3'
miRNA:   3'- -GGCGGUGGUUgu--CGgGGC---GGUUACCG- -5'
2345 5' -58.5 NC_001416.1 + 10985 0.7 0.30238
Target:  5'- gCCaGCgCACCggUcGCCaCCGCCAgcgagGUGGCc -3'
miRNA:   3'- -GG-CG-GUGGuuGuCGG-GGCGGU-----UACCG- -5'
2345 5' -58.5 NC_001416.1 + 652 0.7 0.295043
Target:  5'- gCCGCugCACCGACAGggggagCCCGUCGAgaauacUGGCa -3'
miRNA:   3'- -GGCG--GUGGUUGUCg-----GGGCGGUU------ACCG- -5'
2345 5' -58.5 NC_001416.1 + 17957 0.71 0.256514
Target:  5'- cUCGCCcgACCGACGGCCUCcacgaaugccgauuuGCCAAcGGUg -3'
miRNA:   3'- -GGCGG--UGGUUGUCGGGG---------------CGGUUaCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.