miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23462 3' -57.1 NC_005259.1 + 10746 0.66 0.709858
Target:  5'- cGCGCGcugccGGGCGAucaucaugucgGGCGggUcaucgagguggGCCGCg -3'
miRNA:   3'- uCGCGCca---CUCGCU-----------CCGCuuA-----------UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 41603 0.66 0.699396
Target:  5'- cGCGuCGGUGuuucggaucGCGAGGCuGAccaugguggcgGUGCCGg -3'
miRNA:   3'- uCGC-GCCACu--------CGCUCCG-CU-----------UAUGGCg -5'
23462 3' -57.1 NC_005259.1 + 27147 0.66 0.699396
Target:  5'- cGGCuGCGGUGu-UGGGGCcaacGAUGCCGUc -3'
miRNA:   3'- -UCG-CGCCACucGCUCCGc---UUAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 37760 0.66 0.699396
Target:  5'- cAGCGCGGUGGccccuGCG-GGC-AcgAgCGCa -3'
miRNA:   3'- -UCGCGCCACU-----CGCuCCGcUuaUgGCG- -5'
23462 3' -57.1 NC_005259.1 + 40095 0.66 0.688873
Target:  5'- gAGCGCGGauucucGAGUc-GGCGAAUG-CGCu -3'
miRNA:   3'- -UCGCGCCa-----CUCGcuCCGCUUAUgGCG- -5'
23462 3' -57.1 NC_005259.1 + 5491 0.66 0.678298
Target:  5'- uAGCGCc--GAGCGAGGauCGAGcUACgCGCg -3'
miRNA:   3'- -UCGCGccaCUCGCUCC--GCUU-AUG-GCG- -5'
23462 3' -57.1 NC_005259.1 + 27462 0.66 0.678298
Target:  5'- cGCGCGGgaaauugGGGcCGGGGuCGGuguggccACCGCc -3'
miRNA:   3'- uCGCGCCa------CUC-GCUCC-GCUua-----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 17603 0.66 0.678298
Target:  5'- cGGCGCGaUGAcGUGGGGCGGcgAggacgguuUCGCa -3'
miRNA:   3'- -UCGCGCcACU-CGCUCCGCUuaU--------GGCG- -5'
23462 3' -57.1 NC_005259.1 + 57029 0.66 0.667681
Target:  5'- cGGCGCGGUGGGgucgcacucguCGuAGGCccacACCGUg -3'
miRNA:   3'- -UCGCGCCACUC-----------GC-UCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 38630 0.66 0.667681
Target:  5'- gAGgGCGGUGAcGcCGAguuGGCGAAcucGCCGa -3'
miRNA:   3'- -UCgCGCCACU-C-GCU---CCGCUUa--UGGCg -5'
23462 3' -57.1 NC_005259.1 + 14156 0.66 0.657033
Target:  5'- gAGCGCGucguGUGGaucucGCcGGGCGggUggcaACCGCu -3'
miRNA:   3'- -UCGCGC----CACU-----CGcUCCGCuuA----UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 43712 0.67 0.646364
Target:  5'- cGCGCGaccgcaucGAGuCGAuGGCGGccAUGCCGCc -3'
miRNA:   3'- uCGCGCca------CUC-GCU-CCGCU--UAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 41375 0.67 0.635682
Target:  5'- cGUGCGGUcGAGCuuGGCcGGUACCcaugGCg -3'
miRNA:   3'- uCGCGCCA-CUCGcuCCGcUUAUGG----CG- -5'
23462 3' -57.1 NC_005259.1 + 62694 0.67 0.635682
Target:  5'- gAGUGCGGUGucccauccGGCGAucaGGCGGGggaucUCGCu -3'
miRNA:   3'- -UCGCGCCAC--------UCGCU---CCGCUUau---GGCG- -5'
23462 3' -57.1 NC_005259.1 + 32339 0.67 0.635682
Target:  5'- uGCGCGGccaucaacGCGAGGUuGAUgACCGCc -3'
miRNA:   3'- uCGCGCCacu-----CGCUCCGcUUA-UGGCG- -5'
23462 3' -57.1 NC_005259.1 + 43797 0.67 0.624997
Target:  5'- cAGCGCGGgcaccGAGUccuugccGGGCG--UACCGCc -3'
miRNA:   3'- -UCGCGCCa----CUCGc------UCCGCuuAUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 66257 0.67 0.624997
Target:  5'- cAGCGCGGcccgcgccGGGCGGcGGCucAcGCCGCc -3'
miRNA:   3'- -UCGCGCCa-------CUCGCU-CCGcuUaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 61943 0.67 0.624997
Target:  5'- cGCGCGG-GuGcCGGGGCc---ACCGCa -3'
miRNA:   3'- uCGCGCCaCuC-GCUCCGcuuaUGGCG- -5'
23462 3' -57.1 NC_005259.1 + 68128 0.67 0.614318
Target:  5'- gAGCaGCGGcGAGCucGGCaGGAUGCgCGUa -3'
miRNA:   3'- -UCG-CGCCaCUCGcuCCG-CUUAUG-GCG- -5'
23462 3' -57.1 NC_005259.1 + 18780 0.67 0.603654
Target:  5'- -uCGCGGUGggcaAGCGGuGGCagGGAcGCCGCa -3'
miRNA:   3'- ucGCGCCAC----UCGCU-CCG--CUUaUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.