Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23463 | 5' | -61.6 | NC_005259.1 | + | 46061 | 0.66 | 0.493216 |
Target: 5'- uGGCCUUGagcugcucaaGCACCG-CCggGGCGAg- -3' miRNA: 3'- gCCGGAGC----------CGUGGCuGGagCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 53524 | 0.66 | 0.493216 |
Target: 5'- uGGCCagCGGCACgGG-CUCGGUgcccGGUGu -3' miRNA: 3'- gCCGGa-GCCGUGgCUgGAGCCG----CUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 6410 | 0.66 | 0.483595 |
Target: 5'- gGuGCCcugaugUGGC-CCGACCUCGcCGAUGu -3' miRNA: 3'- gC-CGGa-----GCCGuGGCUGGAGCcGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 13226 | 0.66 | 0.483595 |
Target: 5'- gGGCCUcgacCGGcCACCGugagggccgagcACC-CGGCGGUa -3' miRNA: 3'- gCCGGA----GCC-GUGGC------------UGGaGCCGCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 27048 | 0.66 | 0.474064 |
Target: 5'- uGGCCUUGGC-CUGAgCgacggucaCGGCGAc- -3' miRNA: 3'- gCCGGAGCCGuGGCUgGa-------GCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 57829 | 0.66 | 0.468392 |
Target: 5'- uGGCCagaUCGGCACggaUGACCUCGuggaaccacgacgguGCGAc- -3' miRNA: 3'- gCCGG---AGCCGUG---GCUGGAGC---------------CGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 40080 | 0.66 | 0.463691 |
Target: 5'- gGGCCgaCGcGCACCGAgCgcggauucucgagUCGGCGAa- -3' miRNA: 3'- gCCGGa-GC-CGUGGCUgG-------------AGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 49035 | 0.66 | 0.446059 |
Target: 5'- cCGGUCgagUCGGCACgGACgaugacgugaUCGGCGGUu -3' miRNA: 3'- -GCCGG---AGCCGUGgCUGg---------AGCCGCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 23643 | 0.67 | 0.43693 |
Target: 5'- uGGUUUCGGC-CCG-CCgaCGGCGAc- -3' miRNA: 3'- gCCGGAGCCGuGGCuGGa-GCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 42640 | 0.67 | 0.43693 |
Target: 5'- aGGCacCUCGGCcCCGAUgUgGGCGGc- -3' miRNA: 3'- gCCG--GAGCCGuGGCUGgAgCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 42479 | 0.67 | 0.436023 |
Target: 5'- aGGCC-CGGCccguagaGCCGugacCCgucCGGCGGUGu -3' miRNA: 3'- gCCGGaGCCG-------UGGCu---GGa--GCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 49614 | 0.67 | 0.428807 |
Target: 5'- gGGCagcucaucaucgucaUCGGCggcaGCCG-CgUCGGCGAUGg -3' miRNA: 3'- gCCGg--------------AGCCG----UGGCuGgAGCCGCUAC- -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 2048 | 0.67 | 0.42791 |
Target: 5'- gCGGUCacCGGCACCGAgaCaCGGCGGUu -3' miRNA: 3'- -GCCGGa-GCCGUGGCUg-GaGCCGCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 18900 | 0.67 | 0.42791 |
Target: 5'- uCGaCCUCGGCAacgauCUGAUgCUCGGCGAc- -3' miRNA: 3'- -GCcGGAGCCGU-----GGCUG-GAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 7193 | 0.67 | 0.42791 |
Target: 5'- cCGGCCUgCGgacGCACCGGgCUgCGGUGGa- -3' miRNA: 3'- -GCCGGA-GC---CGUGGCUgGA-GCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 33301 | 0.67 | 0.42791 |
Target: 5'- aCGGCUgCGGCucgauCCcGCCgUCGGCGGUc -3' miRNA: 3'- -GCCGGaGCCGu----GGcUGG-AGCCGCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 12350 | 0.67 | 0.419 |
Target: 5'- -cGCCUCGaaACCGGCCUC-GCGAc- -3' miRNA: 3'- gcCGGAGCcgUGGCUGGAGcCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 22385 | 0.67 | 0.419 |
Target: 5'- -aGCC-CGGU--CGGCCUCGGCGAc- -3' miRNA: 3'- gcCGGaGCCGugGCUGGAGCCGCUac -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 63939 | 0.67 | 0.418116 |
Target: 5'- gGGUCUuaccgucCGGCAgCGAgaUCUCGGCGGUc -3' miRNA: 3'- gCCGGA-------GCCGUgGCU--GGAGCCGCUAc -5' |
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23463 | 5' | -61.6 | NC_005259.1 | + | 47551 | 0.67 | 0.410205 |
Target: 5'- gCGGUCgaauugcguuguUCGcGCGCUGcugucCCUCGGCGGUGu -3' miRNA: 3'- -GCCGG------------AGC-CGUGGCu----GGAGCCGCUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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