miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23463 5' -61.6 NC_005259.1 + 46061 0.66 0.493216
Target:  5'- uGGCCUUGagcugcucaaGCACCG-CCggGGCGAg- -3'
miRNA:   3'- gCCGGAGC----------CGUGGCuGGagCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 53524 0.66 0.493216
Target:  5'- uGGCCagCGGCACgGG-CUCGGUgcccGGUGu -3'
miRNA:   3'- gCCGGa-GCCGUGgCUgGAGCCG----CUAC- -5'
23463 5' -61.6 NC_005259.1 + 13226 0.66 0.483595
Target:  5'- gGGCCUcgacCGGcCACCGugagggccgagcACC-CGGCGGUa -3'
miRNA:   3'- gCCGGA----GCC-GUGGC------------UGGaGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 6410 0.66 0.483595
Target:  5'- gGuGCCcugaugUGGC-CCGACCUCGcCGAUGu -3'
miRNA:   3'- gC-CGGa-----GCCGuGGCUGGAGCcGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 27048 0.66 0.474064
Target:  5'- uGGCCUUGGC-CUGAgCgacggucaCGGCGAc- -3'
miRNA:   3'- gCCGGAGCCGuGGCUgGa-------GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 57829 0.66 0.468392
Target:  5'- uGGCCagaUCGGCACggaUGACCUCGuggaaccacgacgguGCGAc- -3'
miRNA:   3'- gCCGG---AGCCGUG---GCUGGAGC---------------CGCUac -5'
23463 5' -61.6 NC_005259.1 + 40080 0.66 0.463691
Target:  5'- gGGCCgaCGcGCACCGAgCgcggauucucgagUCGGCGAa- -3'
miRNA:   3'- gCCGGa-GC-CGUGGCUgG-------------AGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 49035 0.66 0.446059
Target:  5'- cCGGUCgagUCGGCACgGACgaugacgugaUCGGCGGUu -3'
miRNA:   3'- -GCCGG---AGCCGUGgCUGg---------AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 42640 0.67 0.43693
Target:  5'- aGGCacCUCGGCcCCGAUgUgGGCGGc- -3'
miRNA:   3'- gCCG--GAGCCGuGGCUGgAgCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 23643 0.67 0.43693
Target:  5'- uGGUUUCGGC-CCG-CCgaCGGCGAc- -3'
miRNA:   3'- gCCGGAGCCGuGGCuGGa-GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 42479 0.67 0.436023
Target:  5'- aGGCC-CGGCccguagaGCCGugacCCgucCGGCGGUGu -3'
miRNA:   3'- gCCGGaGCCG-------UGGCu---GGa--GCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 49614 0.67 0.428807
Target:  5'- gGGCagcucaucaucgucaUCGGCggcaGCCG-CgUCGGCGAUGg -3'
miRNA:   3'- gCCGg--------------AGCCG----UGGCuGgAGCCGCUAC- -5'
23463 5' -61.6 NC_005259.1 + 33301 0.67 0.42791
Target:  5'- aCGGCUgCGGCucgauCCcGCCgUCGGCGGUc -3'
miRNA:   3'- -GCCGGaGCCGu----GGcUGG-AGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 18900 0.67 0.42791
Target:  5'- uCGaCCUCGGCAacgauCUGAUgCUCGGCGAc- -3'
miRNA:   3'- -GCcGGAGCCGU-----GGCUG-GAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 7193 0.67 0.42791
Target:  5'- cCGGCCUgCGgacGCACCGGgCUgCGGUGGa- -3'
miRNA:   3'- -GCCGGA-GC---CGUGGCUgGA-GCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 2048 0.67 0.42791
Target:  5'- gCGGUCacCGGCACCGAgaCaCGGCGGUu -3'
miRNA:   3'- -GCCGGa-GCCGUGGCUg-GaGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 22385 0.67 0.419
Target:  5'- -aGCC-CGGU--CGGCCUCGGCGAc- -3'
miRNA:   3'- gcCGGaGCCGugGCUGGAGCCGCUac -5'
23463 5' -61.6 NC_005259.1 + 12350 0.67 0.419
Target:  5'- -cGCCUCGaaACCGGCCUC-GCGAc- -3'
miRNA:   3'- gcCGGAGCcgUGGCUGGAGcCGCUac -5'
23463 5' -61.6 NC_005259.1 + 63939 0.67 0.418116
Target:  5'- gGGUCUuaccgucCGGCAgCGAgaUCUCGGCGGUc -3'
miRNA:   3'- gCCGGA-------GCCGUgGCU--GGAGCCGCUAc -5'
23463 5' -61.6 NC_005259.1 + 58881 0.67 0.410205
Target:  5'- -cGCCUCGGCAUCGccgucgucaucACCcucgggcucgUCGGCGGUc -3'
miRNA:   3'- gcCGGAGCCGUGGC-----------UGG----------AGCCGCUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.