miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23464 3' -57.4 NC_005259.1 + 19172 0.66 0.730011
Target:  5'- gUUCGUCGGCGCucaaCGGUGcccucgacaGCGAgCUCGu -3'
miRNA:   3'- gGAGCAGCCGUG----GCCGC---------UGCUaGAGU- -5'
23464 3' -57.4 NC_005259.1 + 13455 0.66 0.719863
Target:  5'- --cCGUCGGCG-CGGCGcUGGUgCUCAc -3'
miRNA:   3'- ggaGCAGCCGUgGCCGCuGCUA-GAGU- -5'
23464 3' -57.4 NC_005259.1 + 17524 0.66 0.709635
Target:  5'- gCUCGUgGGCACaCaGCGACGG-CgggCAu -3'
miRNA:   3'- gGAGCAgCCGUG-GcCGCUGCUaGa--GU- -5'
23464 3' -57.4 NC_005259.1 + 63933 0.66 0.709635
Target:  5'- aCUCGUgGGUcuuaccguCCGGCaGCGAgaUCUCGg -3'
miRNA:   3'- gGAGCAgCCGu-------GGCCGcUGCU--AGAGU- -5'
23464 3' -57.4 NC_005259.1 + 31887 0.66 0.678576
Target:  5'- aCCUCGcCGGUcucaaggcCCGGCG-CGAgcgcCUCAa -3'
miRNA:   3'- -GGAGCaGCCGu-------GGCCGCuGCUa---GAGU- -5'
23464 3' -57.4 NC_005259.1 + 58913 0.67 0.668129
Target:  5'- gCUCGUCGGCGgucuugucgUCGGCGggcGCGGUggCAg -3'
miRNA:   3'- gGAGCAGCCGU---------GGCCGC---UGCUAgaGU- -5'
23464 3' -57.4 NC_005259.1 + 58386 0.67 0.657652
Target:  5'- gCUcCGaCGGUgcgcaccagccACCGGCGGCGAUCa-- -3'
miRNA:   3'- gGA-GCaGCCG-----------UGGCCGCUGCUAGagu -5'
23464 3' -57.4 NC_005259.1 + 64146 0.67 0.651354
Target:  5'- gCC-CGUCGGCGaugcccuugacguagUCGGCGACuGUCUg- -3'
miRNA:   3'- -GGaGCAGCCGU---------------GGCCGCUGcUAGAgu -5'
23464 3' -57.4 NC_005259.1 + 61431 0.67 0.647153
Target:  5'- cCCUUG-CGggcGCGCCGGU--CGAUCUCAu -3'
miRNA:   3'- -GGAGCaGC---CGUGGCCGcuGCUAGAGU- -5'
23464 3' -57.4 NC_005259.1 + 51781 0.67 0.636642
Target:  5'- gCCUUGagguauUCGGCGCuCGGCGGguCGGUCagcUCAg -3'
miRNA:   3'- -GGAGC------AGCCGUG-GCCGCU--GCUAG---AGU- -5'
23464 3' -57.4 NC_005259.1 + 20059 0.67 0.636642
Target:  5'- --aUGUCcGCugCGGUGGCGGUCgUCAc -3'
miRNA:   3'- ggaGCAGcCGugGCCGCUGCUAG-AGU- -5'
23464 3' -57.4 NC_005259.1 + 55333 0.67 0.626126
Target:  5'- gUCUUGgCGGCAgCGGUGGCGAUg--- -3'
miRNA:   3'- -GGAGCaGCCGUgGCCGCUGCUAgagu -5'
23464 3' -57.4 NC_005259.1 + 62689 0.67 0.626126
Target:  5'- uCCUCGagugCGGUgucccauCCGGCGAUcaggcggggGAUCUCGc -3'
miRNA:   3'- -GGAGCa---GCCGu------GGCCGCUG---------CUAGAGU- -5'
23464 3' -57.4 NC_005259.1 + 8368 0.67 0.615616
Target:  5'- gCUCGgcggcggccUCGGCAUCGGCGA-GAgcCUCGg -3'
miRNA:   3'- gGAGC---------AGCCGUGGCCGCUgCUa-GAGU- -5'
23464 3' -57.4 NC_005259.1 + 56655 0.68 0.605119
Target:  5'- -aUCGagGGCACCGcGCGucACGggCUCGu -3'
miRNA:   3'- ggAGCagCCGUGGC-CGC--UGCuaGAGU- -5'
23464 3' -57.4 NC_005259.1 + 22387 0.68 0.605119
Target:  5'- cCCg-GUCGGCcUCGGCGACGugaUCGa -3'
miRNA:   3'- -GGagCAGCCGuGGCCGCUGCuagAGU- -5'
23464 3' -57.4 NC_005259.1 + 12021 0.68 0.584195
Target:  5'- gCCUUGUaCGGUGCgGGCGGCaaccGGUaCUCAc -3'
miRNA:   3'- -GGAGCA-GCCGUGgCCGCUG----CUA-GAGU- -5'
23464 3' -57.4 NC_005259.1 + 6429 0.68 0.563418
Target:  5'- aCCUCGccgaugUCGGCACCGucGCGcUGAUCggCAg -3'
miRNA:   3'- -GGAGC------AGCCGUGGC--CGCuGCUAGa-GU- -5'
23464 3' -57.4 NC_005259.1 + 7804 0.68 0.563418
Target:  5'- uUCUCGUuuguaaugacCGGUAaugacCCGGCGGCGGUCa-- -3'
miRNA:   3'- -GGAGCA----------GCCGU-----GGCCGCUGCUAGagu -5'
23464 3' -57.4 NC_005259.1 + 15645 0.68 0.553102
Target:  5'- gCC-CGUCcgauccuguGCGacgaCGGCGACGGUCUCAc -3'
miRNA:   3'- -GGaGCAGc--------CGUg---GCCGCUGCUAGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.