miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23464 3' -57.4 NC_005259.1 + 68286 0.7 0.467349
Target:  5'- uCCUCGccccauacaucgggaUCgGGCGcguCCGGCGACGGgaUCUCGa -3'
miRNA:   3'- -GGAGC---------------AG-CCGU---GGCCGCUGCU--AGAGU- -5'
23464 3' -57.4 NC_005259.1 + 67792 0.74 0.262694
Target:  5'- aCCUUGUUGGCACCGcguGCGAgcuugagccCGAUCUUg -3'
miRNA:   3'- -GGAGCAGCCGUGGC---CGCU---------GCUAGAGu -5'
23464 3' -57.4 NC_005259.1 + 67042 0.75 0.243996
Target:  5'- cCCUCGaCGGCGagcacCCGuGCGcCGAUCUCAa -3'
miRNA:   3'- -GGAGCaGCCGU-----GGC-CGCuGCUAGAGU- -5'
23464 3' -57.4 NC_005259.1 + 64146 0.67 0.651354
Target:  5'- gCC-CGUCGGCGaugcccuugacguagUCGGCGACuGUCUg- -3'
miRNA:   3'- -GGaGCAGCCGU---------------GGCCGCUGcUAGAgu -5'
23464 3' -57.4 NC_005259.1 + 63933 0.66 0.709635
Target:  5'- aCUCGUgGGUcuuaccguCCGGCaGCGAgaUCUCGg -3'
miRNA:   3'- gGAGCAgCCGu-------GGCCGcUGCU--AGAGU- -5'
23464 3' -57.4 NC_005259.1 + 63675 0.69 0.532647
Target:  5'- aCCUCG--GGCACCGGCGcgccgGgGAUCUg- -3'
miRNA:   3'- -GGAGCagCCGUGGCCGC-----UgCUAGAgu -5'
23464 3' -57.4 NC_005259.1 + 62689 0.67 0.626126
Target:  5'- uCCUCGagugCGGUgucccauCCGGCGAUcaggcggggGAUCUCGc -3'
miRNA:   3'- -GGAGCa---GCCGu------GGCCGCUG---------CUAGAGU- -5'
23464 3' -57.4 NC_005259.1 + 61728 0.7 0.473122
Target:  5'- aCCUUGUCGaGCAggugugcguCCGGCGA-GAUCUg- -3'
miRNA:   3'- -GGAGCAGC-CGU---------GGCCGCUgCUAGAgu -5'
23464 3' -57.4 NC_005259.1 + 61562 0.71 0.417132
Target:  5'- gCCgacaCGGCACCGGCaguuGAgGAUCUCAu -3'
miRNA:   3'- -GGagcaGCCGUGGCCG----CUgCUAGAGU- -5'
23464 3' -57.4 NC_005259.1 + 61431 0.67 0.647153
Target:  5'- cCCUUG-CGggcGCGCCGGU--CGAUCUCAu -3'
miRNA:   3'- -GGAGCaGC---CGUGGCCGcuGCUAGAGU- -5'
23464 3' -57.4 NC_005259.1 + 60551 0.75 0.232154
Target:  5'- gCUCGUCGGCAugcCCGGUgccGACGGUCa-- -3'
miRNA:   3'- gGAGCAGCCGU---GGCCG---CUGCUAGagu -5'
23464 3' -57.4 NC_005259.1 + 58979 0.69 0.542843
Target:  5'- gCUCGUCGGCGaCGGCGAgcuUGGccuUUUCAc -3'
miRNA:   3'- gGAGCAGCCGUgGCCGCU---GCU---AGAGU- -5'
23464 3' -57.4 NC_005259.1 + 58913 0.67 0.668129
Target:  5'- gCUCGUCGGCGgucuugucgUCGGCGggcGCGGUggCAg -3'
miRNA:   3'- gGAGCAGCCGU---------GGCCGC---UGCUAgaGU- -5'
23464 3' -57.4 NC_005259.1 + 58735 0.73 0.303557
Target:  5'- -gUCGUUGGCACCGGCaccGGCGAagUUCGg -3'
miRNA:   3'- ggAGCAGCCGUGGCCG---CUGCUa-GAGU- -5'
23464 3' -57.4 NC_005259.1 + 58386 0.67 0.657652
Target:  5'- gCUcCGaCGGUgcgcaccagccACCGGCGGCGAUCa-- -3'
miRNA:   3'- gGA-GCaGCCG-----------UGGCCGCUGCUAGagu -5'
23464 3' -57.4 NC_005259.1 + 58161 0.72 0.349135
Target:  5'- aCUCGUCGGCGCaCGGgaucuCGACGcacGUCUUg -3'
miRNA:   3'- gGAGCAGCCGUG-GCC-----GCUGC---UAGAGu -5'
23464 3' -57.4 NC_005259.1 + 56655 0.68 0.605119
Target:  5'- -aUCGagGGCACCGcGCGucACGggCUCGu -3'
miRNA:   3'- ggAGCagCCGUGGC-CGC--UGCuaGAGU- -5'
23464 3' -57.4 NC_005259.1 + 55333 0.67 0.626126
Target:  5'- gUCUUGgCGGCAgCGGUGGCGAUg--- -3'
miRNA:   3'- -GGAGCaGCCGUgGCCGCUGCUAgagu -5'
23464 3' -57.4 NC_005259.1 + 51781 0.67 0.636642
Target:  5'- gCCUUGagguauUCGGCGCuCGGCGGguCGGUCagcUCAg -3'
miRNA:   3'- -GGAGC------AGCCGUG-GCCGCU--GCUAG---AGU- -5'
23464 3' -57.4 NC_005259.1 + 51674 0.7 0.473122
Target:  5'- --gCGUCgGGCACgGGCGcgcgAUGGUCUCAu -3'
miRNA:   3'- ggaGCAG-CCGUGgCCGC----UGCUAGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.