miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 15365 0.66 0.602187
Target:  5'- uCUCGCCGAuCUgGgCGagcUGCCgcaaccgUGGCCg -3'
miRNA:   3'- uGAGCGGCUuGAgC-GC---ACGGa------GCCGG- -5'
23475 5' -59.3 NC_005259.1 + 11035 0.66 0.602187
Target:  5'- gUUCGCCGggUggucacCGCaugacGUGCCgaUCGGCUc -3'
miRNA:   3'- uGAGCGGCuuGa-----GCG-----CACGG--AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 60502 0.66 0.602187
Target:  5'- cACgCGCCGGugUUGuCGUagugcGCCaUGGCCg -3'
miRNA:   3'- -UGaGCGGCUugAGC-GCA-----CGGaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 2634 0.66 0.602187
Target:  5'- cCUCGCCGAACaagggCG-GUGUCgCGGgCa -3'
miRNA:   3'- uGAGCGGCUUGa----GCgCACGGaGCCgG- -5'
23475 5' -59.3 NC_005259.1 + 17670 0.66 0.601141
Target:  5'- --cCGCCGucGACUCGCcccgaggGUGCCuaugagguugUCGGUCg -3'
miRNA:   3'- ugaGCGGC--UUGAGCG-------CACGG----------AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 21644 0.66 0.591747
Target:  5'- gUUCGCCGAGgcuCUCGCGgagaUGCCgaucCaGCCc -3'
miRNA:   3'- uGAGCGGCUU---GAGCGC----ACGGa---GcCGG- -5'
23475 5' -59.3 NC_005259.1 + 36136 0.66 0.591747
Target:  5'- gGC-CGCCGGGCUgucCGUcGCCaUGGCCa -3'
miRNA:   3'- -UGaGCGGCUUGAgc-GCA-CGGaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 47208 0.66 0.591747
Target:  5'- aACUUGCCGAGCUucUGCuGUcCCUCGacGCUg -3'
miRNA:   3'- -UGAGCGGCUUGA--GCG-CAcGGAGC--CGG- -5'
23475 5' -59.3 NC_005259.1 + 6049 0.66 0.581338
Target:  5'- cAC-CGaCGAGCUCGUGUGCg-CGGUg -3'
miRNA:   3'- -UGaGCgGCUUGAGCGCACGgaGCCGg -5'
23475 5' -59.3 NC_005259.1 + 55037 0.66 0.581338
Target:  5'- gGCU-GCCGAGg-UGCuUGCCUCGGUg -3'
miRNA:   3'- -UGAgCGGCUUgaGCGcACGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 42623 0.66 0.581338
Target:  5'- ---aGcCCGAugUCGCGcguaggcaCCUCGGCCc -3'
miRNA:   3'- ugagC-GGCUugAGCGCac------GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 2124 0.66 0.581338
Target:  5'- cGCUCGCCGAggucacgcagACcCGCacgGUGCU--GGCCa -3'
miRNA:   3'- -UGAGCGGCU----------UGaGCG---CACGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 23326 0.66 0.57511
Target:  5'- -gUCGCCGAgccggauuacaucggGCUCGaggcUGCCUgcgaGGCCg -3'
miRNA:   3'- ugAGCGGCU---------------UGAGCgc--ACGGAg---CCGG- -5'
23475 5' -59.3 NC_005259.1 + 60550 0.66 0.570967
Target:  5'- cGCUCGUCGGcauGCcCG-GUGCCgacggucaggCGGCCc -3'
miRNA:   3'- -UGAGCGGCU---UGaGCgCACGGa---------GCCGG- -5'
23475 5' -59.3 NC_005259.1 + 26629 0.66 0.570967
Target:  5'- ---aGCCGAuaucgauggcCUgGCGUGCgCUCGGCa -3'
miRNA:   3'- ugagCGGCUu---------GAgCGCACG-GAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 50945 0.66 0.559612
Target:  5'- gGCUCGuuGcauccuuGGCUCGCGUGgCUgucccacgCGGCg -3'
miRNA:   3'- -UGAGCggC-------UUGAGCGCACgGA--------GCCGg -5'
23475 5' -59.3 NC_005259.1 + 65985 0.66 0.550368
Target:  5'- gGCgCGCCGAgcagccGCUCGaCGUGgugcgcacCCUCggGGCCg -3'
miRNA:   3'- -UGaGCGGCU------UGAGC-GCAC--------GGAG--CCGG- -5'
23475 5' -59.3 NC_005259.1 + 45473 0.67 0.540154
Target:  5'- aACggGCCGAGCUucuggcCGCuGgugGCCUUGGUCg -3'
miRNA:   3'- -UGagCGGCUUGA------GCG-Ca--CGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 14734 0.67 0.540154
Target:  5'- -gUCGCCGAGauguaCGCGcugGCCg-GGCCg -3'
miRNA:   3'- ugAGCGGCUUga---GCGCa--CGGagCCGG- -5'
23475 5' -59.3 NC_005259.1 + 45402 0.67 0.537102
Target:  5'- cGC-CGCCGAGCgCGCuGauggccgccgccgcUGCCUCguaGGCCg -3'
miRNA:   3'- -UGaGCGGCUUGaGCG-C--------------ACGGAG---CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.