miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23475 5' -59.3 NC_005259.1 + 55592 0.72 0.26159
Target:  5'- cGCUgGCCacgcGAuaccacguCUCGCGcGCCUUGGCCg -3'
miRNA:   3'- -UGAgCGG----CUu-------GAGCGCaCGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 55037 0.66 0.581338
Target:  5'- gGCU-GCCGAGg-UGCuUGCCUCGGUg -3'
miRNA:   3'- -UGAgCGGCUUgaGCGcACGGAGCCGg -5'
23475 5' -59.3 NC_005259.1 + 54680 0.67 0.509921
Target:  5'- uGCUCGgCGAGCgagacCGUGUcgaggcgggugGCCUCaGCCu -3'
miRNA:   3'- -UGAGCgGCUUGa----GCGCA-----------CGGAGcCGG- -5'
23475 5' -59.3 NC_005259.1 + 53605 0.69 0.388807
Target:  5'- uGCUCGUCGGGgUCaGCaggcgucgagcgGUGCCgUUGGCCg -3'
miRNA:   3'- -UGAGCGGCUUgAG-CG------------CACGG-AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 53518 0.69 0.415091
Target:  5'- uGCUCGUggccagcggcaCGGGCUCG-GUGCCcggugUCGGCUc -3'
miRNA:   3'- -UGAGCG-----------GCUUGAGCgCACGG-----AGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 52370 0.7 0.347498
Target:  5'- -aUCGCCGAcucaagcgGCUgCGCagccUGCCUCgGGCCa -3'
miRNA:   3'- ugAGCGGCU--------UGA-GCGc---ACGGAG-CCGG- -5'
23475 5' -59.3 NC_005259.1 + 51509 0.69 0.424091
Target:  5'- cGC-CGCCGAucuCgacgCGCGUGaCCUCgugcacggGGCCg -3'
miRNA:   3'- -UGaGCGGCUu--Ga---GCGCAC-GGAG--------CCGG- -5'
23475 5' -59.3 NC_005259.1 + 50945 0.66 0.559612
Target:  5'- gGCUCGuuGcauccuuGGCUCGCGUGgCUgucccacgCGGCg -3'
miRNA:   3'- -UGAGCggC-------UUGAGCGCACgGA--------GCCGg -5'
23475 5' -59.3 NC_005259.1 + 50401 0.8 0.076353
Target:  5'- gGCUCGCCGAGCgCGCcgGUGCCUugacCGGCUc -3'
miRNA:   3'- -UGAGCGGCUUGaGCG--CACGGA----GCCGG- -5'
23475 5' -59.3 NC_005259.1 + 50319 0.68 0.441509
Target:  5'- uACUCGgcaaCGAGCUCGuCGcggcccuUGuCCUCGGUCa -3'
miRNA:   3'- -UGAGCg---GCUUGAGC-GC-------AC-GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 47297 0.7 0.355504
Target:  5'- -gUCGCCGGACa-GCGaccCCUUGGCCu -3'
miRNA:   3'- ugAGCGGCUUGagCGCac-GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 47208 0.66 0.591747
Target:  5'- aACUUGCCGAGCUucUGCuGUcCCUCGacGCUg -3'
miRNA:   3'- -UGAGCGGCUUGA--GCG-CAcGGAGC--CGG- -5'
23475 5' -59.3 NC_005259.1 + 46927 0.69 0.424091
Target:  5'- cGC-CGCCGAGCUUGCccGCCgcgCcGCCg -3'
miRNA:   3'- -UGaGCGGCUUGAGCGcaCGGa--GcCGG- -5'
23475 5' -59.3 NC_005259.1 + 45473 0.67 0.540154
Target:  5'- aACggGCCGAGCUucuggcCGCuGgugGCCUUGGUCg -3'
miRNA:   3'- -UGagCGGCUUGA------GCG-Ca--CGGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 45402 0.67 0.537102
Target:  5'- cGC-CGCCGAGCgCGCuGauggccgccgccgcUGCCUCguaGGCCg -3'
miRNA:   3'- -UGaGCGGCUUGaGCG-C--------------ACGGAG---CCGG- -5'
23475 5' -59.3 NC_005259.1 + 45324 0.74 0.193783
Target:  5'- cGC-CGCCGAACU-GCGUggccugcgccGCCUgGGCCg -3'
miRNA:   3'- -UGaGCGGCUUGAgCGCA----------CGGAgCCGG- -5'
23475 5' -59.3 NC_005259.1 + 42623 0.66 0.581338
Target:  5'- ---aGcCCGAugUCGCGcguaggcaCCUCGGCCc -3'
miRNA:   3'- ugagC-GGCUugAGCGCac------GGAGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 42463 0.67 0.509921
Target:  5'- -gUCGCCG-ACUacgGCGagGCC-CGGCCc -3'
miRNA:   3'- ugAGCGGCuUGAg--CGCa-CGGaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 41658 0.68 0.48042
Target:  5'- cGCUCGgUGAGCgggaucugcacCGCGUGCg-UGGCCa -3'
miRNA:   3'- -UGAGCgGCUUGa----------GCGCACGgaGCCGG- -5'
23475 5' -59.3 NC_005259.1 + 40661 0.8 0.082879
Target:  5'- uGCUCGCCGAGCagCGCGagcGCCUUGGUg -3'
miRNA:   3'- -UGAGCGGCUUGa-GCGCa--CGGAGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.