miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23479 5' -50.9 NC_005259.1 + 24739 0.66 0.962249
Target:  5'- -uGAUGCGgUGugGGguGCCGA-GGCg -3'
miRNA:   3'- ucUUACGCaGCugCCuuUGGCUgUCG- -5'
23479 5' -50.9 NC_005259.1 + 11293 0.66 0.962249
Target:  5'- gAGGAcG-GUCGACGGGcgugaGGCCGagacgggcgcGCAGCu -3'
miRNA:   3'- -UCUUaCgCAGCUGCCU-----UUGGC----------UGUCG- -5'
23479 5' -50.9 NC_005259.1 + 33903 0.66 0.962249
Target:  5'- ----cGCG-CGACGGGccgaGACCGGCcacggugcgAGCa -3'
miRNA:   3'- ucuuaCGCaGCUGCCU----UUGGCUG---------UCG- -5'
23479 5' -50.9 NC_005259.1 + 43398 0.66 0.959969
Target:  5'- gAGGAUGCGaauacguuccUCGGCGGcgguuuccucgcucGACUGGCuGCg -3'
miRNA:   3'- -UCUUACGC----------AGCUGCCu-------------UUGGCUGuCG- -5'
23479 5' -50.9 NC_005259.1 + 5072 0.66 0.958397
Target:  5'- uGGGccGgGUCGACGG--GCCGGugucacCGGCg -3'
miRNA:   3'- -UCUuaCgCAGCUGCCuuUGGCU------GUCG- -5'
23479 5' -50.9 NC_005259.1 + 3122 0.66 0.958397
Target:  5'- ----cGCGgcacCGugGGcAGCgGACGGCa -3'
miRNA:   3'- ucuuaCGCa---GCugCCuUUGgCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 27372 0.66 0.958397
Target:  5'- -uGGUGCc-CGgcACGGuGACCGGCGGCg -3'
miRNA:   3'- ucUUACGcaGC--UGCCuUUGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 46754 0.66 0.958397
Target:  5'- uGGcUGCGcCGACaccugcGCCGACAGCc -3'
miRNA:   3'- uCUuACGCaGCUGccuu--UGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 7880 0.66 0.958397
Target:  5'- cGAGUGCuUgGAcuCGGGcagccGCCGAUAGCg -3'
miRNA:   3'- uCUUACGcAgCU--GCCUu----UGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 40116 0.66 0.958397
Target:  5'- cGAAUGCGcUCG-UGGAAuugGCgGGCgAGCu -3'
miRNA:   3'- uCUUACGC-AGCuGCCUU---UGgCUG-UCG- -5'
23479 5' -50.9 NC_005259.1 + 64946 0.66 0.957997
Target:  5'- gAGggUGgccggguUGUCGAUGGucauGCaCGGCAGUc -3'
miRNA:   3'- -UCuuAC-------GCAGCUGCCuu--UG-GCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 26646 0.66 0.957595
Target:  5'- uGGcGUGCGcUCGGCaGGuucggcgcacCCGGCGGCa -3'
miRNA:   3'- -UCuUACGC-AGCUG-CCuuu-------GGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 58379 0.66 0.956783
Target:  5'- uAGAGcUGCucCGACGGugcgcaccagccACCGGCGGCg -3'
miRNA:   3'- -UCUU-ACGcaGCUGCCuu----------UGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 53623 0.66 0.954283
Target:  5'- ----gGCGUCGAgCGGu-GCCGuuGGCc -3'
miRNA:   3'- ucuuaCGCAGCU-GCCuuUGGCugUCG- -5'
23479 5' -50.9 NC_005259.1 + 22311 0.66 0.954283
Target:  5'- cAGA--GC-UCGGCGGAuacACCGAC-GCa -3'
miRNA:   3'- -UCUuaCGcAGCUGCCUu--UGGCUGuCG- -5'
23479 5' -50.9 NC_005259.1 + 4118 0.66 0.949903
Target:  5'- cGGcgGCcUCGACGuGGccaaGACCGuCGGCg -3'
miRNA:   3'- uCUuaCGcAGCUGC-CU----UUGGCuGUCG- -5'
23479 5' -50.9 NC_005259.1 + 23657 0.66 0.945252
Target:  5'- cGAcgGCGaCGGCuGGAccGCCGACcccgAGCa -3'
miRNA:   3'- uCUuaCGCaGCUG-CCUu-UGGCUG----UCG- -5'
23479 5' -50.9 NC_005259.1 + 62724 0.66 0.940327
Target:  5'- gGGGAUcucGC-UCGAcCGGA--CCGGCGGCa -3'
miRNA:   3'- -UCUUA---CGcAGCU-GCCUuuGGCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 59423 0.66 0.940327
Target:  5'- ----gGCGUCGGCGGccauGAagaaCGGCGGUu -3'
miRNA:   3'- ucuuaCGCAGCUGCCu---UUg---GCUGUCG- -5'
23479 5' -50.9 NC_005259.1 + 21009 0.66 0.940327
Target:  5'- ----gGCGgCGACccuGACCGGCAGCu -3'
miRNA:   3'- ucuuaCGCaGCUGccuUUGGCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.