Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23479 | 5' | -50.9 | NC_005259.1 | + | 24739 | 0.66 | 0.962249 |
Target: 5'- -uGAUGCGgUGugGGguGCCGA-GGCg -3' miRNA: 3'- ucUUACGCaGCugCCuuUGGCUgUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 11293 | 0.66 | 0.962249 |
Target: 5'- gAGGAcG-GUCGACGGGcgugaGGCCGagacgggcgcGCAGCu -3' miRNA: 3'- -UCUUaCgCAGCUGCCU-----UUGGC----------UGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 33903 | 0.66 | 0.962249 |
Target: 5'- ----cGCG-CGACGGGccgaGACCGGCcacggugcgAGCa -3' miRNA: 3'- ucuuaCGCaGCUGCCU----UUGGCUG---------UCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 43398 | 0.66 | 0.959969 |
Target: 5'- gAGGAUGCGaauacguuccUCGGCGGcgguuuccucgcucGACUGGCuGCg -3' miRNA: 3'- -UCUUACGC----------AGCUGCCu-------------UUGGCUGuCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 40116 | 0.66 | 0.958397 |
Target: 5'- cGAAUGCGcUCG-UGGAAuugGCgGGCgAGCu -3' miRNA: 3'- uCUUACGC-AGCuGCCUU---UGgCUG-UCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 5072 | 0.66 | 0.958397 |
Target: 5'- uGGGccGgGUCGACGG--GCCGGugucacCGGCg -3' miRNA: 3'- -UCUuaCgCAGCUGCCuuUGGCU------GUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 7880 | 0.66 | 0.958397 |
Target: 5'- cGAGUGCuUgGAcuCGGGcagccGCCGAUAGCg -3' miRNA: 3'- uCUUACGcAgCU--GCCUu----UGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 46754 | 0.66 | 0.958397 |
Target: 5'- uGGcUGCGcCGACaccugcGCCGACAGCc -3' miRNA: 3'- uCUuACGCaGCUGccuu--UGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 27372 | 0.66 | 0.958397 |
Target: 5'- -uGGUGCc-CGgcACGGuGACCGGCGGCg -3' miRNA: 3'- ucUUACGcaGC--UGCCuUUGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 3122 | 0.66 | 0.958397 |
Target: 5'- ----cGCGgcacCGugGGcAGCgGACGGCa -3' miRNA: 3'- ucuuaCGCa---GCugCCuUUGgCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 64946 | 0.66 | 0.957997 |
Target: 5'- gAGggUGgccggguUGUCGAUGGucauGCaCGGCAGUc -3' miRNA: 3'- -UCuuAC-------GCAGCUGCCuu--UG-GCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 26646 | 0.66 | 0.957595 |
Target: 5'- uGGcGUGCGcUCGGCaGGuucggcgcacCCGGCGGCa -3' miRNA: 3'- -UCuUACGC-AGCUG-CCuuu-------GGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 58379 | 0.66 | 0.956783 |
Target: 5'- uAGAGcUGCucCGACGGugcgcaccagccACCGGCGGCg -3' miRNA: 3'- -UCUU-ACGcaGCUGCCuu----------UGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 53623 | 0.66 | 0.954283 |
Target: 5'- ----gGCGUCGAgCGGu-GCCGuuGGCc -3' miRNA: 3'- ucuuaCGCAGCU-GCCuuUGGCugUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 22311 | 0.66 | 0.954283 |
Target: 5'- cAGA--GC-UCGGCGGAuacACCGAC-GCa -3' miRNA: 3'- -UCUuaCGcAGCUGCCUu--UGGCUGuCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 4118 | 0.66 | 0.949903 |
Target: 5'- cGGcgGCcUCGACGuGGccaaGACCGuCGGCg -3' miRNA: 3'- uCUuaCGcAGCUGC-CU----UUGGCuGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 23657 | 0.66 | 0.945252 |
Target: 5'- cGAcgGCGaCGGCuGGAccGCCGACcccgAGCa -3' miRNA: 3'- uCUuaCGCaGCUG-CCUu-UGGCUG----UCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 62724 | 0.66 | 0.940327 |
Target: 5'- gGGGAUcucGC-UCGAcCGGA--CCGGCGGCa -3' miRNA: 3'- -UCUUA---CGcAGCU-GCCUuuGGCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 59423 | 0.66 | 0.940327 |
Target: 5'- ----gGCGUCGGCGGccauGAagaaCGGCGGUu -3' miRNA: 3'- ucuuaCGCAGCUGCCu---UUg---GCUGUCG- -5' |
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23479 | 5' | -50.9 | NC_005259.1 | + | 21009 | 0.66 | 0.940327 |
Target: 5'- ----gGCGgCGACccuGACCGGCAGCu -3' miRNA: 3'- ucuuaCGCaGCUGccuUUGGCUGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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