miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23486 5' -58.4 NC_005259.1 + 14229 0.66 0.63899
Target:  5'- cGCGCGuCGUGCGUAUCGG-GCCGGg- -3'
miRNA:   3'- -CGUGCuGCGUGUGUGGUCgCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 13460 0.66 0.63899
Target:  5'- gGCGCGGCGCugGugcuCACC-GCGCUGc-- -3'
miRNA:   3'- -CGUGCUGCGugU----GUGGuCGCGGCcac -5'
23486 5' -58.4 NC_005259.1 + 68786 0.66 0.63899
Target:  5'- aGCAgGuCGUACGCcggGgCGGUGUCGGUGc -3'
miRNA:   3'- -CGUgCuGCGUGUG---UgGUCGCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 27449 0.66 0.63899
Target:  5'- cGCAUGAgcuCGuCGCGCgggaaauugggGCCGGgGUCGGUGu -3'
miRNA:   3'- -CGUGCU---GC-GUGUG-----------UGGUCgCGGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 66005 0.66 0.63899
Target:  5'- -gACGugGUGCGCACCcucGGgGCCGcacGUGu -3'
miRNA:   3'- cgUGCugCGUGUGUGG---UCgCGGC---CAC- -5'
23486 5' -58.4 NC_005259.1 + 60668 0.66 0.637931
Target:  5'- cCAUGACGCACgcguucuGCACCgAGCGgUGGc- -3'
miRNA:   3'- cGUGCUGCGUG-------UGUGG-UCGCgGCCac -5'
23486 5' -58.4 NC_005259.1 + 29780 0.66 0.628402
Target:  5'- cCACGAgGCACcC-CCGGUGCCucGGUa -3'
miRNA:   3'- cGUGCUgCGUGuGuGGUCGCGG--CCAc -5'
23486 5' -58.4 NC_005259.1 + 40551 0.66 0.628402
Target:  5'- gGUAguCGACGCGCGC-CC-GCG-CGGUGu -3'
miRNA:   3'- -CGU--GCUGCGUGUGuGGuCGCgGCCAC- -5'
23486 5' -58.4 NC_005259.1 + 16790 0.66 0.628402
Target:  5'- gGguCGACGCGgucgcguacauCGCGCuCGGgGCCGGg- -3'
miRNA:   3'- -CguGCUGCGU-----------GUGUG-GUCgCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 8758 0.66 0.617816
Target:  5'- aGguCGAgGCccUugGCCAGCGCggCGGUGa -3'
miRNA:   3'- -CguGCUgCGu-GugUGGUCGCG--GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 47223 0.66 0.617816
Target:  5'- uGCugucccuCGACGCuguuggugaACGuCgACCAGCGCuCGGUGa -3'
miRNA:   3'- -CGu------GCUGCG---------UGU-G-UGGUCGCG-GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 2147 0.66 0.617816
Target:  5'- cGCACG--GUGCugGCCAGCggcgucgagccGCCGGUu -3'
miRNA:   3'- -CGUGCugCGUGugUGGUCG-----------CGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 38893 0.66 0.617816
Target:  5'- -gACGACGCugGCcggaauguucAUCAGCGCuugagcacguCGGUGu -3'
miRNA:   3'- cgUGCUGCGugUG----------UGGUCGCG----------GCCAC- -5'
23486 5' -58.4 NC_005259.1 + 60243 0.66 0.614643
Target:  5'- gGCACGcuuGCGUGCGggugcaaggcuggcCACCAGCgcuGCCGGg- -3'
miRNA:   3'- -CGUGC---UGCGUGU--------------GUGGUCG---CGGCCac -5'
23486 5' -58.4 NC_005259.1 + 36842 0.66 0.607243
Target:  5'- uGCACG-UGCugACGCCGcccgcuGCGCCGu-- -3'
miRNA:   3'- -CGUGCuGCGugUGUGGU------CGCGGCcac -5'
23486 5' -58.4 NC_005259.1 + 26587 0.66 0.607243
Target:  5'- uGCGCGAgGgGuuugccuugaucCACGCC-GCGCCGGa- -3'
miRNA:   3'- -CGUGCUgCgU------------GUGUGGuCGCGGCCac -5'
23486 5' -58.4 NC_005259.1 + 15539 0.66 0.606186
Target:  5'- gGC-CGcCGuCACugGCCGGUGCCacccucaGGUGg -3'
miRNA:   3'- -CGuGCuGC-GUGugUGGUCGCGG-------CCAC- -5'
23486 5' -58.4 NC_005259.1 + 30890 0.66 0.596689
Target:  5'- uCAUGACGCAaACGCgAgguGUGCCGGUu -3'
miRNA:   3'- cGUGCUGCGUgUGUGgU---CGCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 3836 0.66 0.596689
Target:  5'- cCACGACGaugucccuCGCACCGucGaCGCCGGUc -3'
miRNA:   3'- cGUGCUGCgu------GUGUGGU--C-GCGGCCAc -5'
23486 5' -58.4 NC_005259.1 + 9832 0.66 0.595635
Target:  5'- gGUGCGGCGCugGCccaaucgacauugACCAGaCGCgGGa- -3'
miRNA:   3'- -CGUGCUGCGugUG-------------UGGUC-GCGgCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.