miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23491 3' -61.4 NC_005259.1 + 15422 0.66 0.512305
Target:  5'- gCGuGCCACCaAGGccgaucucgaguaucUGGCcgagaucaaCCCGUugGCCa -3'
miRNA:   3'- -GC-CGGUGGcUCC---------------ACCG---------GGGCAugUGG- -5'
23491 3' -61.4 NC_005259.1 + 43966 0.66 0.508388
Target:  5'- gGGCCGCCGccugaccgaGGGcGGUgCCGauggACGCUg -3'
miRNA:   3'- gCCGGUGGC---------UCCaCCGgGGCa---UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 3261 0.66 0.498653
Target:  5'- uCGGCauccuGCUcGGGUGGUuuCCCGU-CGCCg -3'
miRNA:   3'- -GCCGg----UGGcUCCACCG--GGGCAuGUGG- -5'
23491 3' -61.4 NC_005259.1 + 15556 0.66 0.498653
Target:  5'- gGuGCCACCcucAGGUGGCCaCCcucgGgGCCa -3'
miRNA:   3'- gC-CGGUGGc--UCCACCGG-GGca--UgUGG- -5'
23491 3' -61.4 NC_005259.1 + 27476 0.66 0.498653
Target:  5'- gGGCCGgggUCGGuGUGGCCaCCGccccacGCGCCg -3'
miRNA:   3'- gCCGGU---GGCUcCACCGG-GGCa-----UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 62125 0.66 0.498653
Target:  5'- -aGUCACCGAGGUGaucGUCUCGacCACCu -3'
miRNA:   3'- gcCGGUGGCUCCAC---CGGGGCauGUGG- -5'
23491 3' -61.4 NC_005259.1 + 67747 0.66 0.498653
Target:  5'- gCGGCCACU-AGGccGCCCCG---GCCa -3'
miRNA:   3'- -GCCGGUGGcUCCacCGGGGCaugUGG- -5'
23491 3' -61.4 NC_005259.1 + 47827 0.66 0.486124
Target:  5'- gGGCCACCGcugccgcugacGGUGcgagcuuuucgagcGCCuuGUugGCCu -3'
miRNA:   3'- gCCGGUGGCu----------CCAC--------------CGGggCAugUGG- -5'
23491 3' -61.4 NC_005259.1 + 14058 0.66 0.479439
Target:  5'- uCGGCgacgagaccagCACgGcGGUGGCCUaCGUGCGCa -3'
miRNA:   3'- -GCCG-----------GUGgCuCCACCGGG-GCAUGUGg -5'
23491 3' -61.4 NC_005259.1 + 50023 0.66 0.479439
Target:  5'- gGGCgCugCGuaauccgcuGUGGCCUCG-ACACCg -3'
miRNA:   3'- gCCG-GugGCuc-------CACCGGGGCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 23986 0.66 0.478488
Target:  5'- gCGcGCCACCacGGUGGCCaagacacUCGaggACACCa -3'
miRNA:   3'- -GC-CGGUGGcuCCACCGG-------GGCa--UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 67097 0.66 0.469969
Target:  5'- uGGCCcauugguCCGAGGUGuacuGCCCgcugcggucgugCGUgaGCACCg -3'
miRNA:   3'- gCCGGu------GGCUCCAC----CGGG------------GCA--UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 38731 0.66 0.469969
Target:  5'- -uGCCGCCGuaccggcGGUGGCCCgcCGcAgGCCg -3'
miRNA:   3'- gcCGGUGGCu------CCACCGGG--GCaUgUGG- -5'
23491 3' -61.4 NC_005259.1 + 58650 0.66 0.469969
Target:  5'- -uGCCcUCGcGGUaGCCCgGUGCACCg -3'
miRNA:   3'- gcCGGuGGCuCCAcCGGGgCAUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 50796 0.66 0.469969
Target:  5'- uCGGaCCAUCGAGGUucuuguucGGUCagCGcGCACCa -3'
miRNA:   3'- -GCC-GGUGGCUCCA--------CCGGg-GCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 17761 0.66 0.469969
Target:  5'- aGGCCGCCGcGcGccgGGCCgaGcGCACCg -3'
miRNA:   3'- gCCGGUGGCuC-Ca--CCGGggCaUGUGG- -5'
23491 3' -61.4 NC_005259.1 + 23366 0.66 0.469969
Target:  5'- aGGCCGCCGAGGcaUGGa-UCGUcaACAgCg -3'
miRNA:   3'- gCCGGUGGCUCC--ACCggGGCA--UGUgG- -5'
23491 3' -61.4 NC_005259.1 + 40886 0.66 0.469969
Target:  5'- cCGGCCACCGuggcgGGGUcGGCagCGUcccACGCUu -3'
miRNA:   3'- -GCCGGUGGC-----UCCA-CCGggGCA---UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 13235 0.66 0.466208
Target:  5'- cCGGCCACCguGAGGgccGaGCaCCCGgcgguagaugagaACACCu -3'
miRNA:   3'- -GCCGGUGG--CUCCa--C-CG-GGGCa------------UGUGG- -5'
23491 3' -61.4 NC_005259.1 + 5420 0.66 0.460595
Target:  5'- uGGCCGCCacgucGAGGUcuGCgCCCGcUGcCGCCg -3'
miRNA:   3'- gCCGGUGG-----CUCCAc-CG-GGGC-AU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.