miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23499 5' -58.7 NC_005259.1 + 35461 0.66 0.63851
Target:  5'- cACCGGCACCgC-CAGcACCGcccgguAgGCCGAa -3'
miRNA:   3'- -UGGCUGUGGgGaGUC-UGGC------UgUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 22669 0.66 0.63851
Target:  5'- cGCCGACGCa-CU--GACCGcCGCCGAu -3'
miRNA:   3'- -UGGCUGUGggGAguCUGGCuGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 12052 0.66 0.63851
Target:  5'- cACCGAgGCCgagCUCugcGGCaGACACCGAg -3'
miRNA:   3'- -UGGCUgUGGg--GAGu--CUGgCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 6079 0.66 0.63851
Target:  5'- cGCCGAacaggACgCCCUCAacGCCGAgauCGCCGAg -3'
miRNA:   3'- -UGGCUg----UG-GGGAGUc-UGGCU---GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 34427 0.66 0.63851
Target:  5'- cGCgaGACGCCCCUCGaugagcugccGACCGGgcagcguguCGCUGAu -3'
miRNA:   3'- -UGg-CUGUGGGGAGU----------CUGGCU---------GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 51457 0.66 0.63851
Target:  5'- cGCCGAuagagcuugUugCCCUCGgcGACCcACACCGc -3'
miRNA:   3'- -UGGCU---------GugGGGAGU--CUGGcUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 47928 0.66 0.63851
Target:  5'- cGCCGAgGCCCUggaAG-CCGAUgacggcgguGCCGAu -3'
miRNA:   3'- -UGGCUgUGGGGag-UCuGGCUG---------UGGCU- -5'
23499 5' -58.7 NC_005259.1 + 4526 0.66 0.634307
Target:  5'- uGCgCGGCACCCCggucgauugugccCAGugCGggcacgaggucACGCCGAu -3'
miRNA:   3'- -UG-GCUGUGGGGa------------GUCugGC-----------UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 37704 0.66 0.628002
Target:  5'- gACUGAUuuuGCCCUgcCAGACCcgaGGCACCGc -3'
miRNA:   3'- -UGGCUG---UGGGGa-GUCUGG---CUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 6227 0.66 0.628002
Target:  5'- cGCCGACACCgU---GACCGugGgCGAg -3'
miRNA:   3'- -UGGCUGUGGgGaguCUGGCugUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 26344 0.66 0.628002
Target:  5'- ---aGCACgCCCUCGGGCCGAgCugCGc -3'
miRNA:   3'- uggcUGUG-GGGAGUCUGGCU-GugGCu -5'
23499 5' -58.7 NC_005259.1 + 41436 0.66 0.62485
Target:  5'- gGCCGccauuuGCGCCCCgcguagUAGACCcagaagcggcccguGACGCCGu -3'
miRNA:   3'- -UGGC------UGUGGGGa-----GUCUGG--------------CUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 43022 0.66 0.617497
Target:  5'- aACCGGCgauGCCgCCgagCAGGCCGccgaGCAgCGAa -3'
miRNA:   3'- -UGGCUG---UGG-GGa--GUCUGGC----UGUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 35287 0.66 0.617497
Target:  5'- cGCCGAUguGCCCCUUgaaguagauGACCGAgGgCGGu -3'
miRNA:   3'- -UGGCUG--UGGGGAGu--------CUGGCUgUgGCU- -5'
23499 5' -58.7 NC_005259.1 + 16231 0.66 0.596531
Target:  5'- gGCCGaACGCaCCC-CGGugCugcGCACCGAc -3'
miRNA:   3'- -UGGC-UGUG-GGGaGUCugGc--UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 45619 0.66 0.596531
Target:  5'- cUCGAUGCCCgC-CGGGCCGggcagcGCGCCGGu -3'
miRNA:   3'- uGGCUGUGGG-GaGUCUGGC------UGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 3566 0.66 0.596531
Target:  5'- uGCCGAgcuCGCCgCCUacaaGGACauCGACACCGc -3'
miRNA:   3'- -UGGCU---GUGG-GGAg---UCUG--GCUGUGGCu -5'
23499 5' -58.7 NC_005259.1 + 36963 0.66 0.596531
Target:  5'- -gCGAgACCgCCUCGGcCCGcacCGCCGAa -3'
miRNA:   3'- ugGCUgUGG-GGAGUCuGGCu--GUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 18136 0.66 0.596531
Target:  5'- cAUCGGCAaggCCauggacgagaUCGGGCUGACGCCGGa -3'
miRNA:   3'- -UGGCUGUg--GGg---------AGUCUGGCUGUGGCU- -5'
23499 5' -58.7 NC_005259.1 + 67713 0.66 0.596531
Target:  5'- gGCgGGCauACCCgUCAGccucgauCCGAUACCGGc -3'
miRNA:   3'- -UGgCUG--UGGGgAGUCu------GGCUGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.