miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23501	5'	-58.2	NC_005259.1	+	62671	0.66	0.604502
	Target:  5'- aGCGAGGCCAcGacc-UCGuCCUCGAg -3' miRNA:   3'- gCGCUCCGGUuCgacaAGCcGGAGCU- -5'
23501	5'	-58.2	NC_005259.1	+	3325	0.66	0.604502
	Target:  5'- aCGUGAGcGCCGGGCagcucugcgUGcUCGGCacgaCUCGAc -3' miRNA:   3'- -GCGCUC-CGGUUCG---------ACaAGCCG----GAGCU- -5'
23501	5'	-58.2	NC_005259.1	+	34001	0.66	0.615123
	Target:  5'- gGUGAGcuGCaaccGGCUGUaucCGGCCUCGGc -3' miRNA:   3'- gCGCUC--CGgu--UCGACAa--GCCGGAGCU- -5'
23501	5'	-58.2	NC_005259.1	+	12054	0.66	0.625758
	Target:  5'- -cCGAGGCCGAGCUcugCGGCagacacCGAg -3' miRNA:   3'- gcGCUCCGGUUCGAcaaGCCGga----GCU- -5'
23501	5'	-58.2	NC_005259.1	+	29048	0.66	0.625758
	Target:  5'- aCGaCGAGaGCCGcgAGCgcgGUaUCGGCC-CGAu -3' miRNA:   3'- -GC-GCUC-CGGU--UCGa--CA-AGCCGGaGCU- -5'
23501	5'	-58.2	NC_005259.1	+	36219	0.66	0.625758
	Target:  5'- gCGCGAuGCCGAGCaccUUGGCCagcgCGAg -3' miRNA:   3'- -GCGCUcCGGUUCGacaAGCCGGa---GCU- -5'
23501	5'	-58.2	NC_005259.1	+	6548	0.66	0.636398
	Target:  5'- gGCGAgcGGUgAAGCUGUgcgCGgcgugucaggccGCCUCGGa -3' miRNA:   3'- gCGCU--CCGgUUCGACAa--GC------------CGGAGCU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home