Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 13211 | 0.78 | 0.121704 |
Target: 5'- aGCGGGGCC-AGCgGUg-GGCCUCGAc -3' miRNA: 3'- gCGCUCCGGuUCGaCAagCCGGAGCU- -5' |
|||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 12054 | 0.66 | 0.625758 |
Target: 5'- -cCGAGGCCGAGCUcugCGGCagacacCGAg -3' miRNA: 3'- gcGCUCCGGUUCGAcaaGCCGga----GCU- -5' |
|||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 10630 | 0.69 | 0.43295 |
Target: 5'- gCGuCGAGGCCGaacAGCU---UGGCCUCGc -3' miRNA: 3'- -GC-GCUCCGGU---UCGAcaaGCCGGAGCu -5' |
|||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 9534 | 0.73 | 0.272483 |
Target: 5'- cCGCcGGGUCAccggagAGCUGccCGGCCUCGAc -3' miRNA: 3'- -GCGcUCCGGU------UCGACaaGCCGGAGCU- -5' |
|||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 6548 | 0.66 | 0.636398 |
Target: 5'- gGCGAgcGGUgAAGCUGUgcgCGgcgugucaggccGCCUCGGa -3' miRNA: 3'- gCGCU--CCGgUUCGACAa--GC------------CGGAGCU- -5' |
|||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 3325 | 0.66 | 0.604502 |
Target: 5'- aCGUGAGcGCCGGGCagcucugcgUGcUCGGCacgaCUCGAc -3' miRNA: 3'- -GCGCUC-CGGUUCG---------ACaAGCCG----GAGCU- -5' |
|||||||
23501 | 5' | -58.2 | NC_005259.1 | + | 1786 | 0.7 | 0.396692 |
Target: 5'- cCGaCGAGGCCcccaAGGCUGUcaUGGCCgacgCGAg -3' miRNA: 3'- -GC-GCUCCGG----UUCGACAa-GCCGGa---GCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home