miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23506 3' -62.6 NC_005259.1 + 9554 0.66 0.426187
Target:  5'- uGCCCGGCCucgACcGCgUCGgcgaggUGCUCGUCAa -3'
miRNA:   3'- -CGGGCUGG---UGuCGgAGC------ACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 29442 0.66 0.426187
Target:  5'- cCUCGGCCuCAGCCagCGUGaCCuUGCCGc -3'
miRNA:   3'- cGGGCUGGuGUCGGa-GCAC-GG-GCGGU- -5'
23506 3' -62.6 NC_005259.1 + 41754 0.66 0.426187
Target:  5'- cGCUCGACCucGCAGCCUUGcGCgaacaacaCCGgCAu -3'
miRNA:   3'- -CGGGCUGG--UGUCGGAGCaCG--------GGCgGU- -5'
23506 3' -62.6 NC_005259.1 + 66849 0.66 0.417294
Target:  5'- cGCCCGcacggGCCACcgaucGGCCUUGUucGCaCCGCg- -3'
miRNA:   3'- -CGGGC-----UGGUG-----UCGGAGCA--CG-GGCGgu -5'
23506 3' -62.6 NC_005259.1 + 43829 0.66 0.417294
Target:  5'- cGCCgGACaCAgGGCCgcc-GCUCGCCAu -3'
miRNA:   3'- -CGGgCUG-GUgUCGGagcaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 53862 0.66 0.417294
Target:  5'- -gCCGACCACAGCUcaaGcGCUaCGCCGa -3'
miRNA:   3'- cgGGCUGGUGUCGGag-CaCGG-GCGGU- -5'
23506 3' -62.6 NC_005259.1 + 36958 0.66 0.399851
Target:  5'- uGCCCgcgaGACC---GCCUCG-GCCCGCa- -3'
miRNA:   3'- -CGGG----CUGGuguCGGAGCaCGGGCGgu -5'
23506 3' -62.6 NC_005259.1 + 1415 0.66 0.399851
Target:  5'- aCCCGAgCACGGCauacgUCGUGCUCGg-- -3'
miRNA:   3'- cGGGCUgGUGUCGg----AGCACGGGCggu -5'
23506 3' -62.6 NC_005259.1 + 34063 0.66 0.391306
Target:  5'- uGUCCGACCACGGCggCGgUGUCCacacguagGCCc -3'
miRNA:   3'- -CGGGCUGGUGUCGgaGC-ACGGG--------CGGu -5'
23506 3' -62.6 NC_005259.1 + 40697 0.66 0.391306
Target:  5'- gGCCCGAUgAuCGGg---GUGCCCGCCAc -3'
miRNA:   3'- -CGGGCUGgU-GUCggagCACGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 66755 0.66 0.391306
Target:  5'- uGCCCGGCCu--GCCagUCGaccGCCUGCUg -3'
miRNA:   3'- -CGGGCUGGuguCGG--AGCa--CGGGCGGu -5'
23506 3' -62.6 NC_005259.1 + 37397 0.66 0.390458
Target:  5'- cGCgCCGcCCAUGGUgUUGUugacgccGCCCGCCGu -3'
miRNA:   3'- -CG-GGCuGGUGUCGgAGCA-------CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 43191 0.66 0.382881
Target:  5'- -aCCGACCucgGCGGCgaUGUcgacGCCCGCCu -3'
miRNA:   3'- cgGGCUGG---UGUCGgaGCA----CGGGCGGu -5'
23506 3' -62.6 NC_005259.1 + 10121 0.66 0.382881
Target:  5'- -aCCGugCGCaucAGCCcacgcgCGcGCCCGCCGu -3'
miRNA:   3'- cgGGCugGUG---UCGGa-----GCaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 53453 0.67 0.374578
Target:  5'- uGCC--ACCACGGCggcuggCUCGUcguccgGCCCGCCGu -3'
miRNA:   3'- -CGGgcUGGUGUCG------GAGCA------CGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 67120 0.67 0.374578
Target:  5'- uGCCCG-CUGCGGUCgugCGUGagcaCCGCUg -3'
miRNA:   3'- -CGGGCuGGUGUCGGa--GCACg---GGCGGu -5'
23506 3' -62.6 NC_005259.1 + 23887 0.67 0.374578
Target:  5'- aUCCGcuGCCGCccgAGCCgcCGcGCCCGCCGu -3'
miRNA:   3'- cGGGC--UGGUG---UCGGa-GCaCGGGCGGU- -5'
23506 3' -62.6 NC_005259.1 + 26146 0.67 0.374578
Target:  5'- cGCCgaGGCCgaGCAGCC-CGaaaaUGCCCGCg- -3'
miRNA:   3'- -CGGg-CUGG--UGUCGGaGC----ACGGGCGgu -5'
23506 3' -62.6 NC_005259.1 + 27404 0.67 0.366397
Target:  5'- gGCagCGGCgGCAGCUcgGUGCCCGCgAg -3'
miRNA:   3'- -CGg-GCUGgUGUCGGagCACGGGCGgU- -5'
23506 3' -62.6 NC_005259.1 + 36722 0.67 0.35834
Target:  5'- cGCUCGACC-C-GCCgc--GCCCGCCGg -3'
miRNA:   3'- -CGGGCUGGuGuCGGagcaCGGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.