miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23507 5' -55.1 NC_005259.1 + 50073 0.67 0.704141
Target:  5'- gGGUGUAgACCugcggCAGcucGCCGAUGGUg -3'
miRNA:   3'- aCCACGUgUGGua---GUCa--CGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 49982 0.67 0.725399
Target:  5'- --uUGCGCGCacggAUCGcGUGCgGACGGCu -3'
miRNA:   3'- accACGUGUGg---UAGU-CACGgCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 48201 0.66 0.746292
Target:  5'- cGG-GCAUGCCGUCguAGUGguacgaCCGAUAGUc -3'
miRNA:   3'- aCCaCGUGUGGUAG--UCAC------GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 47156 0.66 0.750418
Target:  5'- -cGUGCGCagcagaucACCGUagcggcgaaggucggCGGUGCCGuCGGCg -3'
miRNA:   3'- acCACGUG--------UGGUA---------------GUCACGGCuGUCG- -5'
23507 5' -55.1 NC_005259.1 + 44410 0.68 0.67176
Target:  5'- cGGUGCcCGCCugaccggCAGcGCCGAuacCGGCc -3'
miRNA:   3'- aCCACGuGUGGua-----GUCaCGGCU---GUCG- -5'
23507 5' -55.1 NC_005259.1 + 41857 0.67 0.708417
Target:  5'- cGGUGUcccacucgacgggcaGCACCGUggCGG-GCCGAUAcGCa -3'
miRNA:   3'- aCCACG---------------UGUGGUA--GUCaCGGCUGU-CG- -5'
23507 5' -55.1 NC_005259.1 + 40549 0.66 0.765718
Target:  5'- gUGGUagucgacGCGCGCCcgcgCGGUGUugcuguCGGCGGCu -3'
miRNA:   3'- -ACCA-------CGUGUGGua--GUCACG------GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 40137 0.66 0.76065
Target:  5'- cGGgcgaGCuCGCCGUCGGUugucggugcccgccCCGGCAGCu -3'
miRNA:   3'- aCCa---CGuGUGGUAGUCAc-------------GGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 37300 0.67 0.682604
Target:  5'- cGGUGCcCGCCggGUCAGca--GACAGCg -3'
miRNA:   3'- aCCACGuGUGG--UAGUCacggCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 36899 0.72 0.436891
Target:  5'- cGGUGaGCGCCccacugacggggauAUC-GUGCCGACGGUg -3'
miRNA:   3'- aCCACgUGUGG--------------UAGuCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 35679 0.66 0.776746
Target:  5'- gUGGUGCACAgCGacgCcGUGCC--CGGCg -3'
miRNA:   3'- -ACCACGUGUgGUa--GuCACGGcuGUCG- -5'
23507 5' -55.1 NC_005259.1 + 34554 0.75 0.273723
Target:  5'- ---aGCuuGCCGUCGGgGCCGACGGCg -3'
miRNA:   3'- accaCGugUGGUAGUCaCGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 34161 0.7 0.499678
Target:  5'- gUGGUGC-C-CCAcCAGUGCCGgaacacaccggGCAGUg -3'
miRNA:   3'- -ACCACGuGuGGUaGUCACGGC-----------UGUCG- -5'
23507 5' -55.1 NC_005259.1 + 32980 0.68 0.617189
Target:  5'- gGGUGCcgAUGCCGagGGUGCCGcCAcGCc -3'
miRNA:   3'- aCCACG--UGUGGUagUCACGGCuGU-CG- -5'
23507 5' -55.1 NC_005259.1 + 30194 0.66 0.766728
Target:  5'- ---aGCACuaccCCGUCGGUGCCcGCcGCg -3'
miRNA:   3'- accaCGUGu---GGUAGUCACGGcUGuCG- -5'
23507 5' -55.1 NC_005259.1 + 28622 0.66 0.786617
Target:  5'- aUGGccaagGCcaAgGCCAcCGGUGCCGACAccGCc -3'
miRNA:   3'- -ACCa----CG--UgUGGUaGUCACGGCUGU--CG- -5'
23507 5' -55.1 NC_005259.1 + 28301 0.68 0.659788
Target:  5'- cGGUGC-CGCCcugcgcagcguagAUCGGUGUgccguccuUGGCGGCg -3'
miRNA:   3'- aCCACGuGUGG-------------UAGUCACG--------GCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 28115 0.68 0.67176
Target:  5'- cGGUcGaUugACCGUUcGUGCCGACguaGGCg -3'
miRNA:   3'- aCCA-C-GugUGGUAGuCACGGCUG---UCG- -5'
23507 5' -55.1 NC_005259.1 + 27371 0.76 0.253642
Target:  5'- uUGGUGCccgGCACgGUgaccggcggCGGUGUCGGCAGCg -3'
miRNA:   3'- -ACCACG---UGUGgUA---------GUCACGGCUGUCG- -5'
23507 5' -55.1 NC_005259.1 + 26962 0.66 0.766728
Target:  5'- -cGUGCGCAgCG-CcGUGCCGAacuCGGCg -3'
miRNA:   3'- acCACGUGUgGUaGuCACGGCU---GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.