Results 21 - 40 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 45004 | 0.72 | 0.480151 |
Target: 5'- aCCGcCGACcgcCGGgGCCGCGCCGCc- -3' miRNA: 3'- -GGCaGCUGua-GCCaUGGCGUGGUGag -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 43890 | 0.66 | 0.819467 |
Target: 5'- gCCGcCGACAUUGc--CCGCGCCGgCUg -3' miRNA: 3'- -GGCaGCUGUAGCcauGGCGUGGU-GAg -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 42202 | 0.66 | 0.82838 |
Target: 5'- gCCGUCG-CGaUGGaugcccGCCGCGCCGC-Cg -3' miRNA: 3'- -GGCAGCuGUaGCCa-----UGGCGUGGUGaG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 41378 | 0.69 | 0.636868 |
Target: 5'- gCgGUCGAgCuuggcCGGUACCcauggcGCGCCGCUCg -3' miRNA: 3'- -GgCAGCU-Gua---GCCAUGG------CGUGGUGAG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 41320 | 0.66 | 0.843924 |
Target: 5'- -gGUCGACcucgaaaagggCGGUGCCGUcggauACCACg- -3' miRNA: 3'- ggCAGCUGua---------GCCAUGGCG-----UGGUGag -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 40148 | 0.72 | 0.500171 |
Target: 5'- gCCGUCGguuGUCGGUGCC-CGCCccggcaGCUCg -3' miRNA: 3'- -GGCAGCug-UAGCCAUGGcGUGG------UGAG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 39474 | 0.68 | 0.715448 |
Target: 5'- gCCGUCgucgcgguagcacgaGAUAUCGaGcuugaugGCCGCGCCGCUg -3' miRNA: 3'- -GGCAG---------------CUGUAGC-Ca------UGGCGUGGUGAg -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 38929 | 0.66 | 0.801089 |
Target: 5'- aCGUCGGUGUugcugugccCGGUGCCGCuGCCGC-Cg -3' miRNA: 3'- gGCAGCUGUA---------GCCAUGGCG-UGGUGaG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 38164 | 0.69 | 0.668973 |
Target: 5'- gCCGaUGACGgugaUCGGUGCCucgucGCugUACUCg -3' miRNA: 3'- -GGCaGCUGU----AGCCAUGG-----CGugGUGAG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 37035 | 0.7 | 0.583392 |
Target: 5'- aUGUCGAUcUUGGUGCC-CGCCAC-Cg -3' miRNA: 3'- gGCAGCUGuAGCCAUGGcGUGGUGaG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 36888 | 0.66 | 0.837097 |
Target: 5'- gCCGaCGACGcCGGUGagCGCcCCACUg -3' miRNA: 3'- -GGCaGCUGUaGCCAUg-GCGuGGUGAg -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 35623 | 0.68 | 0.73202 |
Target: 5'- gCGUCGAguaguUCGG-GCCGCcGCCGCUg -3' miRNA: 3'- gGCAGCUgu---AGCCaUGGCG-UGGUGAg -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 34865 | 0.68 | 0.711272 |
Target: 5'- gUGUCcuCGUCGGUGCCGgACCGgggugcCUCg -3' miRNA: 3'- gGCAGcuGUAGCCAUGGCgUGGU------GAG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 32826 | 0.66 | 0.82838 |
Target: 5'- gCCGUCGAUAUUGGUGuucuCC-CAgaACUCu -3' miRNA: 3'- -GGCAGCUGUAGCCAU----GGcGUggUGAG- -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 31624 | 0.66 | 0.837097 |
Target: 5'- uUGUCGcCAgcgCGuuGUACUGCGCCACg- -3' miRNA: 3'- gGCAGCuGUa--GC--CAUGGCGUGGUGag -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 28963 | 0.74 | 0.395443 |
Target: 5'- aUCGcCGAgGUCGGUGCCGagGCCGCg- -3' miRNA: 3'- -GGCaGCUgUAGCCAUGGCg-UGGUGag -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 27662 | 0.7 | 0.583392 |
Target: 5'- gUGUCGACAUCGagccauuuGUugCGCgACCACg- -3' miRNA: 3'- gGCAGCUGUAGC--------CAugGCG-UGGUGag -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 26996 | 0.68 | 0.710226 |
Target: 5'- aCGuUCGACGuuUCGGUcuugaacGCCGCGCCguaGCUg -3' miRNA: 3'- gGC-AGCUGU--AGCCA-------UGGCGUGG---UGAg -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 24053 | 0.74 | 0.395443 |
Target: 5'- gUCGUCGGCG-CGGUGCUcaaucucguGCACCGCg- -3' miRNA: 3'- -GGCAGCUGUaGCCAUGG---------CGUGGUGag -5' |
|||||||
23511 | 3' | -54.8 | NC_005259.1 | + | 23474 | 0.73 | 0.43192 |
Target: 5'- gCC-UCGGCAuugUCGGUGCCGaCGCCAUg- -3' miRNA: 3'- -GGcAGCUGU---AGCCAUGGC-GUGGUGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home