miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23512 5' -57.7 NC_005259.1 + 20519 0.66 0.641181
Target:  5'- -gUGuCCCgagcacggGUGCGCUGCCCGCagCGUg -3'
miRNA:   3'- gaACcGGG--------UAUGCGACGGGUGa-GCGu -5'
23512 5' -57.7 NC_005259.1 + 35085 0.66 0.63039
Target:  5'- -gUGGCCU--GCGCaGUCCACaaGCAg -3'
miRNA:   3'- gaACCGGGuaUGCGaCGGGUGagCGU- -5'
23512 5' -57.7 NC_005259.1 + 65629 0.66 0.587333
Target:  5'- -aUGGCCCAUGaucgGCUGCaCCuuuCUCaGCc -3'
miRNA:   3'- gaACCGGGUAUg---CGACG-GGu--GAG-CGu -5'
23512 5' -57.7 NC_005259.1 + 57693 0.67 0.576638
Target:  5'- -gUGGCCagguUGCcggGCuUGCCCgACUCGCGg -3'
miRNA:   3'- gaACCGGgu--AUG---CG-ACGGG-UGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 44236 0.67 0.565987
Target:  5'- ---cGCCCGccGCGCcGCCCGCgCGCGa -3'
miRNA:   3'- gaacCGGGUa-UGCGaCGGGUGaGCGU- -5'
23512 5' -57.7 NC_005259.1 + 9777 0.67 0.565987
Target:  5'- -cUGGCUCGacuucUGCccggugUGCCCGCUCGCGc -3'
miRNA:   3'- gaACCGGGUau---GCG------ACGGGUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 27732 0.67 0.555387
Target:  5'- aCUUGuucgcGCCCGc-UGCUGCCCACggUGCAu -3'
miRNA:   3'- -GAAC-----CGGGUauGCGACGGGUGa-GCGU- -5'
23512 5' -57.7 NC_005259.1 + 63790 0.67 0.544846
Target:  5'- aCUUGGCCgCGUucuugaucuuGCGUgugGUCCGCUCGa- -3'
miRNA:   3'- -GAACCGG-GUA----------UGCGa--CGGGUGAGCgu -5'
23512 5' -57.7 NC_005259.1 + 41386 0.67 0.543796
Target:  5'- gCUUGGCCgGUacccaugGCGCgccgcucggggUGCCCACgaugUGCAc -3'
miRNA:   3'- -GAACCGGgUA-------UGCG-----------ACGGGUGa---GCGU- -5'
23512 5' -57.7 NC_005259.1 + 22847 0.67 0.534371
Target:  5'- --cGGCCCAccCGCaGCCgcaaccugUACUCGCAg -3'
miRNA:   3'- gaaCCGGGUauGCGaCGG--------GUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 30573 0.67 0.52812
Target:  5'- cCUUGGCCgCAguaGCGCUguuguccucccacacGCCCACggucUCGCc -3'
miRNA:   3'- -GAACCGG-GUa--UGCGA---------------CGGGUG----AGCGu -5'
23512 5' -57.7 NC_005259.1 + 54393 0.67 0.523968
Target:  5'- gCUUGGCCUGUuccuCGCgGauuuugucgauaUCCGCUCGCAg -3'
miRNA:   3'- -GAACCGGGUAu---GCGaC------------GGGUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 50510 0.67 0.522932
Target:  5'- -gUGGgCgGUGCGCUGCaCCucgacgcGCUCGCc -3'
miRNA:   3'- gaACCgGgUAUGCGACG-GG-------UGAGCGu -5'
23512 5' -57.7 NC_005259.1 + 1677 0.68 0.513643
Target:  5'- --aGGUCCGaucUGCGC-GCCCGCaagCGCGa -3'
miRNA:   3'- gaaCCGGGU---AUGCGaCGGGUGa--GCGU- -5'
23512 5' -57.7 NC_005259.1 + 32300 0.68 0.511588
Target:  5'- cCUUGGCCCAgagccuugagcCGCagUGCCCGCcaauugugCGCGg -3'
miRNA:   3'- -GAACCGGGUau---------GCG--ACGGGUGa-------GCGU- -5'
23512 5' -57.7 NC_005259.1 + 24849 0.68 0.503402
Target:  5'- ---aGUCCGUGCGCUacgccgagGCCCGcCUCGCu -3'
miRNA:   3'- gaacCGGGUAUGCGA--------CGGGU-GAGCGu -5'
23512 5' -57.7 NC_005259.1 + 10133 0.68 0.483196
Target:  5'- ---aGCCCAcGCGCgcGCCCGCcguUCGCAc -3'
miRNA:   3'- gaacCGGGUaUGCGa-CGGGUG---AGCGU- -5'
23512 5' -57.7 NC_005259.1 + 49658 0.68 0.473239
Target:  5'- --cGGCCUcgAUACGC-GCCUGCUCGg- -3'
miRNA:   3'- gaaCCGGG--UAUGCGaCGGGUGAGCgu -5'
23512 5' -57.7 NC_005259.1 + 61187 0.69 0.453644
Target:  5'- -aUGGCCCu--CGCcgGUCUGCUUGCAc -3'
miRNA:   3'- gaACCGGGuauGCGa-CGGGUGAGCGU- -5'
23512 5' -57.7 NC_005259.1 + 24332 0.69 0.453644
Target:  5'- --cGGCCuCAcGCGCUgGCCUaccgccggguGCUCGCAc -3'
miRNA:   3'- gaaCCGG-GUaUGCGA-CGGG----------UGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.