miRNA display CGI


Results 61 - 80 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23557 5' -58.2 NC_005261.1 + 57870 0.7 0.527886
Target:  5'- cAGAACgUGCCgcuagcgaCUGCGUgACCGAGGAg -3'
miRNA:   3'- uUCUUGgACGGg-------GACGCG-UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 57666 0.68 0.640427
Target:  5'- aAGGAGCCUGUCUcgcggaacuuuCUGCGCACCcAGc- -3'
miRNA:   3'- -UUCUUGGACGGG-----------GACGCGUGGuUCcu -5'
23557 5' -58.2 NC_005261.1 + 56304 0.7 0.537892
Target:  5'- -uGGGCCUGCUCC--CGCACCucAAGGAg -3'
miRNA:   3'- uuCUUGGACGGGGacGCGUGG--UUCCU- -5'
23557 5' -58.2 NC_005261.1 + 55260 0.66 0.742119
Target:  5'- cGAGGAggUCUGCgCCCccugGCGCGCCGgaggcGGGGg -3'
miRNA:   3'- -UUCUU--GGACG-GGGa---CGCGUGGU-----UCCU- -5'
23557 5' -58.2 NC_005261.1 + 53947 0.69 0.55809
Target:  5'- cGGGGCCgggGCCgccggcggcaCCUGCGCcauGCCGGGGGc -3'
miRNA:   3'- uUCUUGGa--CGG----------GGACGCG---UGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 52012 0.68 0.619725
Target:  5'- cGGcACCggcUGCCCCgguucgGCGCGCCGAcgcGGAg -3'
miRNA:   3'- uUCuUGG---ACGGGGa-----CGCGUGGUU---CCU- -5'
23557 5' -58.2 NC_005261.1 + 50575 0.68 0.661103
Target:  5'- -cGGugCUGCCCCuggUGCGCgggcucACCGuGGAg -3'
miRNA:   3'- uuCUugGACGGGG---ACGCG------UGGUuCCU- -5'
23557 5' -58.2 NC_005261.1 + 49366 0.67 0.702094
Target:  5'- gGAGAGgCUGUCCCgcgagGCGCgGCCcAGGu -3'
miRNA:   3'- -UUCUUgGACGGGGa----CGCG-UGGuUCCu -5'
23557 5' -58.2 NC_005261.1 + 48809 0.7 0.50809
Target:  5'- gGGGAGCCcggcgGCCgCgcaCGCGCCGAGGAa -3'
miRNA:   3'- -UUCUUGGa----CGGgGac-GCGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 47255 0.66 0.76158
Target:  5'- cGAGGACCUGCgCCgGCcCGCCGGcGAa -3'
miRNA:   3'- -UUCUUGGACGgGGaCGcGUGGUUcCU- -5'
23557 5' -58.2 NC_005261.1 + 44954 0.71 0.441561
Target:  5'- gGAGAGCCUGCUgCgggacGCGCGCgAGGGc -3'
miRNA:   3'- -UUCUUGGACGGgGa----CGCGUGgUUCCu -5'
23557 5' -58.2 NC_005261.1 + 44281 0.67 0.712215
Target:  5'- cGGGGCCcGCCgCCagcgGCGgGCCAGGGc -3'
miRNA:   3'- uUCUUGGaCGG-GGa---CGCgUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 40722 0.69 0.552006
Target:  5'- -cGAGCCgaaacguuccggcgGCCCCgGCGCccCCAAGGGc -3'
miRNA:   3'- uuCUUGGa-------------CGGGGaCGCGu-GGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 39568 0.68 0.619725
Target:  5'- cGGAGCCcGCCCUcgccugGgGgGCCGAGGAg -3'
miRNA:   3'- uUCUUGGaCGGGGa-----CgCgUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 39270 0.69 0.588764
Target:  5'- cGGGACCUGCCgagCCUGaCGCucgacuaCGAGGAc -3'
miRNA:   3'- uUCUUGGACGG---GGAC-GCGug-----GUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 37947 0.66 0.736201
Target:  5'- uGGGGCCUucugccgcuucgugcGCCaCCgGCGCGCCGacuGGGGg -3'
miRNA:   3'- uUCUUGGA---------------CGG-GGaCGCGUGGU---UCCU- -5'
23557 5' -58.2 NC_005261.1 + 37622 0.7 0.51795
Target:  5'- cGGGACCUGCaCCUGCGCgGCCGcguGGc -3'
miRNA:   3'- uUCUUGGACGgGGACGCG-UGGUu--CCu -5'
23557 5' -58.2 NC_005261.1 + 36580 0.66 0.751904
Target:  5'- cGGGGGCCcGCCgCgGC-CACCGGGGGg -3'
miRNA:   3'- -UUCUUGGaCGGgGaCGcGUGGUUCCU- -5'
23557 5' -58.2 NC_005261.1 + 35769 0.77 0.216126
Target:  5'- gGAGGuCCgGCgCCUGCGCGCCGAGGc -3'
miRNA:   3'- -UUCUuGGaCGgGGACGCGUGGUUCCu -5'
23557 5' -58.2 NC_005261.1 + 35693 0.66 0.77114
Target:  5'- --cGGCgaGCCCCgGUGgGCCGGGGGc -3'
miRNA:   3'- uucUUGgaCGGGGaCGCgUGGUUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.