Results 21 - 40 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23557 | 5' | -58.2 | NC_005261.1 | + | 19862 | 0.71 | 0.432459 |
Target: 5'- -cGGGCCgcgcGCCCCaGCGCccggccgagagGCCGAGGAg -3' miRNA: 3'- uuCUUGGa---CGGGGaCGCG-----------UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 29070 | 0.71 | 0.441561 |
Target: 5'- gGAGAACCUGCCCggccuggugCUGUGgCGCCugccuGGGGc -3' miRNA: 3'- -UUCUUGGACGGG---------GACGC-GUGGu----UCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 82950 | 0.71 | 0.47901 |
Target: 5'- cAGcGCCcccGCCUCcgGCGCGCCAGGGGg -3' miRNA: 3'- uUCuUGGa--CGGGGa-CGCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 119088 | 0.71 | 0.469498 |
Target: 5'- -----gCUGgCCgUGCGCGCCGAGGAg -3' miRNA: 3'- uucuugGACgGGgACGCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 112905 | 0.7 | 0.51795 |
Target: 5'- --cAACCUGCCgCgCUGCGUGCgCGAGGGc -3' miRNA: 3'- uucUUGGACGG-G-GACGCGUG-GUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 30170 | 0.7 | 0.537892 |
Target: 5'- -cGcGCCcGCCgCgCUGCGCGCCGAGGc -3' miRNA: 3'- uuCuUGGaCGG-G-GACGCGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 97428 | 0.7 | 0.488615 |
Target: 5'- -cGGGCCUGCCCUUGgGCGCgGgucuGGGc -3' miRNA: 3'- uuCUUGGACGGGGACgCGUGgUu---CCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 56304 | 0.7 | 0.537892 |
Target: 5'- -uGGGCCUGCUCC--CGCACCucAAGGAg -3' miRNA: 3'- uuCUUGGACGGGGacGCGUGG--UUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 104486 | 0.7 | 0.488615 |
Target: 5'- -cGGGCCcgGCCCCgGCGCcGCgCGAGGGg -3' miRNA: 3'- uuCUUGGa-CGGGGaCGCG-UG-GUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 59434 | 0.7 | 0.49831 |
Target: 5'- gGGGAGCCgugagagggaGCCCCUGCG-GCgGGGGAg -3' miRNA: 3'- -UUCUUGGa---------CGGGGACGCgUGgUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 48809 | 0.7 | 0.50809 |
Target: 5'- gGGGAGCCcggcgGCCgCgcaCGCGCCGAGGAa -3' miRNA: 3'- -UUCUUGGa----CGGgGac-GCGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 37622 | 0.7 | 0.51795 |
Target: 5'- cGGGACCUGCaCCUGCGCgGCCGcguGGc -3' miRNA: 3'- uUCUUGGACGgGGACGCG-UGGUu--CCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 57870 | 0.7 | 0.527886 |
Target: 5'- cAGAACgUGCCgcuagcgaCUGCGUgACCGAGGAg -3' miRNA: 3'- uUCUUGgACGGg-------GACGCG-UGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 134688 | 0.7 | 0.537892 |
Target: 5'- -cGcGCCcGCCgCgCUGCGCGCCGAGGc -3' miRNA: 3'- uuCuUGGaCGG-G-GACGCGUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 86310 | 0.7 | 0.527886 |
Target: 5'- cGGGACCaggccgcgGCCgCUGCGCGCCcGGGc -3' miRNA: 3'- uUCUUGGa-------CGGgGACGCGUGGuUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 31815 | 0.69 | 0.578497 |
Target: 5'- -uGGACCgcgGCCCgCUGCaGCGCCGcgcGGAu -3' miRNA: 3'- uuCUUGGa--CGGG-GACG-CGUGGUu--CCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 357 | 0.69 | 0.568271 |
Target: 5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3' miRNA: 3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 138040 | 0.69 | 0.568271 |
Target: 5'- cGGcACCgcugGCCCCgggaGCACCAGGGGc -3' miRNA: 3'- uUCuUGGa---CGGGGacg-CGUGGUUCCU- -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 101822 | 0.69 | 0.588764 |
Target: 5'- ---cGCCUGCCCCaucccgcuaUGUGgGCCAGGGc -3' miRNA: 3'- uucuUGGACGGGG---------ACGCgUGGUUCCu -5' |
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23557 | 5' | -58.2 | NC_005261.1 | + | 39270 | 0.69 | 0.588764 |
Target: 5'- cGGGACCUGCCgagCCUGaCGCucgacuaCGAGGAc -3' miRNA: 3'- uUCUUGGACGG---GGAC-GCGug-----GUUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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