miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 69702 0.66 0.755363
Target:  5'- gCGC-GCGGGCGcCGGCg-GCGCCgGCAg -3'
miRNA:   3'- -GUGaUGCUCGU-GUCGgaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 79311 0.66 0.774487
Target:  5'- gGCgugcGCGGGCGCGcuggugcgcgcGCUggcgcGCGCCUGCGa -3'
miRNA:   3'- gUGa---UGCUCGUGU-----------CGGa----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 11710 0.66 0.783859
Target:  5'- gCGCgGCGGGCGCGGgCgcccagGCagaccGCCUGCGg -3'
miRNA:   3'- -GUGaUGCUCGUGUCgGa-----CG-----CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 60546 0.66 0.764985
Target:  5'- gGCcguCGuAGCcCGGCCcguccgcgcccUGCGCCUGCAg -3'
miRNA:   3'- gUGau-GC-UCGuGUCGG-----------ACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 88091 0.66 0.755363
Target:  5'- aCGCgACGGccaacGCACAGCUUGUGgaCCUGCu -3'
miRNA:   3'- -GUGaUGCU-----CGUGUCGGACGC--GGACGu -5'
23558 3' -57.9 NC_005261.1 + 104818 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 56810 0.66 0.774487
Target:  5'- gGCcgACGA-CGCcGCCUGUGCCUGgGg -3'
miRNA:   3'- gUGa-UGCUcGUGuCGGACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 11819 0.66 0.755363
Target:  5'- gGCgACGGcGCGCgaAGUCUcuugGCGCCUGCAc -3'
miRNA:   3'- gUGaUGCU-CGUG--UCGGA----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 41861 0.66 0.764985
Target:  5'- --aUGCGAucGCGCGGCC-GCGCCagGCc -3'
miRNA:   3'- gugAUGCU--CGUGUCGGaCGCGGa-CGu -5'
23558 3' -57.9 NC_005261.1 + 31439 0.66 0.755363
Target:  5'- gCGCUgguGCGGGCGCAGacgGCGCUgGCGc -3'
miRNA:   3'- -GUGA---UGCUCGUGUCggaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 19670 0.66 0.755363
Target:  5'- cCGCgcgcGCGGGCACGGCgUccucgcgcGCGCC-GCAg -3'
miRNA:   3'- -GUGa---UGCUCGUGUCGgA--------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 37984 0.66 0.774487
Target:  5'- gACUGgGGGCugGCAGaCgUGCGCCcgGCGg -3'
miRNA:   3'- gUGAUgCUCG--UGUC-GgACGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 35752 0.66 0.774487
Target:  5'- gCGCgGCG-GCGC-GCCgaggagguccgGCGCCUGCGc -3'
miRNA:   3'- -GUGaUGCuCGUGuCGGa----------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 114657 0.66 0.755363
Target:  5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3'
miRNA:   3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5'
23558 3' -57.9 NC_005261.1 + 136170 0.66 0.774487
Target:  5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3'
miRNA:   3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5'
23558 3' -57.9 NC_005261.1 + 115034 0.66 0.754394
Target:  5'- cCGCUGCGGGCcccGCGGCgcgcucgCUgucgcccccggcGCGCCUGCc -3'
miRNA:   3'- -GUGAUGCUCG---UGUCG-------GA------------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 7588 0.66 0.783859
Target:  5'- gCGCgucgGCGAGCGCAcgcgcGCCccGCGCgCUGUu -3'
miRNA:   3'- -GUGa---UGCUCGUGU-----CGGa-CGCG-GACGu -5'
23558 3' -57.9 NC_005261.1 + 59988 0.66 0.774487
Target:  5'- cCGC--CGGGuCGCAcGCCUGCGgCUGCu -3'
miRNA:   3'- -GUGauGCUC-GUGU-CGGACGCgGACGu -5'
23558 3' -57.9 NC_005261.1 + 50741 0.66 0.755363
Target:  5'- -cCUGCGcgccAGCACGGCCgcgccgaaccUgacgcGCGCCUGCGa -3'
miRNA:   3'- guGAUGC----UCGUGUCGG----------A-----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 39205 0.66 0.764985
Target:  5'- uGCUGUGGGCGCGcGCCgccGCGCCgccGCu -3'
miRNA:   3'- gUGAUGCUCGUGU-CGGa--CGCGGa--CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.