Results 1 - 20 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23558 | 3' | -57.9 | NC_005261.1 | + | 69702 | 0.66 | 0.755363 |
Target: 5'- gCGC-GCGGGCGcCGGCg-GCGCCgGCAg -3' miRNA: 3'- -GUGaUGCUCGU-GUCGgaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 79311 | 0.66 | 0.774487 |
Target: 5'- gGCgugcGCGGGCGCGcuggugcgcgcGCUggcgcGCGCCUGCGa -3' miRNA: 3'- gUGa---UGCUCGUGU-----------CGGa----CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 11710 | 0.66 | 0.783859 |
Target: 5'- gCGCgGCGGGCGCGGgCgcccagGCagaccGCCUGCGg -3' miRNA: 3'- -GUGaUGCUCGUGUCgGa-----CG-----CGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 60546 | 0.66 | 0.764985 |
Target: 5'- gGCcguCGuAGCcCGGCCcguccgcgcccUGCGCCUGCAg -3' miRNA: 3'- gUGau-GC-UCGuGUCGG-----------ACGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 88091 | 0.66 | 0.755363 |
Target: 5'- aCGCgACGGccaacGCACAGCUUGUGgaCCUGCu -3' miRNA: 3'- -GUGaUGCU-----CGUGUCGGACGC--GGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 104818 | 0.66 | 0.755363 |
Target: 5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3' miRNA: 3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 56810 | 0.66 | 0.774487 |
Target: 5'- gGCcgACGA-CGCcGCCUGUGCCUGgGg -3' miRNA: 3'- gUGa-UGCUcGUGuCGGACGCGGACgU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 11819 | 0.66 | 0.755363 |
Target: 5'- gGCgACGGcGCGCgaAGUCUcuugGCGCCUGCAc -3' miRNA: 3'- gUGaUGCU-CGUG--UCGGA----CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 41861 | 0.66 | 0.764985 |
Target: 5'- --aUGCGAucGCGCGGCC-GCGCCagGCc -3' miRNA: 3'- gugAUGCU--CGUGUCGGaCGCGGa-CGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 31439 | 0.66 | 0.755363 |
Target: 5'- gCGCUgguGCGGGCGCAGacgGCGCUgGCGc -3' miRNA: 3'- -GUGA---UGCUCGUGUCggaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 19670 | 0.66 | 0.755363 |
Target: 5'- cCGCgcgcGCGGGCACGGCgUccucgcgcGCGCC-GCAg -3' miRNA: 3'- -GUGa---UGCUCGUGUCGgA--------CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 37984 | 0.66 | 0.774487 |
Target: 5'- gACUGgGGGCugGCAGaCgUGCGCCcgGCGg -3' miRNA: 3'- gUGAUgCUCG--UGUC-GgACGCGGa-CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 35752 | 0.66 | 0.774487 |
Target: 5'- gCGCgGCG-GCGC-GCCgaggagguccgGCGCCUGCGc -3' miRNA: 3'- -GUGaUGCuCGUGuCGGa----------CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 114657 | 0.66 | 0.755363 |
Target: 5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3' miRNA: 3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 136170 | 0.66 | 0.774487 |
Target: 5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3' miRNA: 3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 115034 | 0.66 | 0.754394 |
Target: 5'- cCGCUGCGGGCcccGCGGCgcgcucgCUgucgcccccggcGCGCCUGCc -3' miRNA: 3'- -GUGAUGCUCG---UGUCG-------GA------------CGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 7588 | 0.66 | 0.783859 |
Target: 5'- gCGCgucgGCGAGCGCAcgcgcGCCccGCGCgCUGUu -3' miRNA: 3'- -GUGa---UGCUCGUGU-----CGGa-CGCG-GACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 59988 | 0.66 | 0.774487 |
Target: 5'- cCGC--CGGGuCGCAcGCCUGCGgCUGCu -3' miRNA: 3'- -GUGauGCUC-GUGU-CGGACGCgGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 50741 | 0.66 | 0.755363 |
Target: 5'- -cCUGCGcgccAGCACGGCCgcgccgaaccUgacgcGCGCCUGCGa -3' miRNA: 3'- guGAUGC----UCGUGUCGG----------A-----CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 39205 | 0.66 | 0.764985 |
Target: 5'- uGCUGUGGGCGCGcGCCgccGCGCCgccGCu -3' miRNA: 3'- gUGAUGCUCGUGU-CGGa--CGCGGa--CGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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