miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 16840 0.71 0.463813
Target:  5'- gCACU-CGGGCAgGcGCCgccgccgcgggGCGCCUGCAg -3'
miRNA:   3'- -GUGAuGCUCGUgU-CGGa----------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 38988 0.74 0.343316
Target:  5'- aCGCggcccgGCGGGCGCGacGCCgacGCGCCUGCc -3'
miRNA:   3'- -GUGa-----UGCUCGUGU--CGGa--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 95963 0.73 0.400689
Target:  5'- gGCUGCuGGGCGCGGCCgccucGCGCggGCAg -3'
miRNA:   3'- gUGAUG-CUCGUGUCGGa----CGCGgaCGU- -5'
23558 3' -57.9 NC_005261.1 + 5862 0.73 0.400689
Target:  5'- gCGCcGCGAGCGCGGCgaGCGCgCcGCGg -3'
miRNA:   3'- -GUGaUGCUCGUGUCGgaCGCG-GaCGU- -5'
23558 3' -57.9 NC_005261.1 + 90649 0.72 0.40937
Target:  5'- uCGC-GCGcGCGCGGCuCUGCGCCaUGCGc -3'
miRNA:   3'- -GUGaUGCuCGUGUCG-GACGCGG-ACGU- -5'
23558 3' -57.9 NC_005261.1 + 30717 0.72 0.417283
Target:  5'- gCGCUGCccuucGGCGCGGCCUGCGUggcgcagCUGCu -3'
miRNA:   3'- -GUGAUGc----UCGUGUCGGACGCG-------GACGu -5'
23558 3' -57.9 NC_005261.1 + 65271 0.72 0.427079
Target:  5'- cCGCggcgGCGGGCGCgAGCCgGUGCCgGCGc -3'
miRNA:   3'- -GUGa---UGCUCGUG-UCGGaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 77878 0.72 0.436102
Target:  5'- gCACUGCcuGGcGCGCGGCCgcgGCGCC-GCAa -3'
miRNA:   3'- -GUGAUG--CU-CGUGUCGGa--CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 62403 0.72 0.454472
Target:  5'- cCACcucccCGGGCGCGGCC-GCGCCggGCAc -3'
miRNA:   3'- -GUGau---GCUCGUGUCGGaCGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 108408 0.74 0.343316
Target:  5'- aGCUcgGCGAGCGCGGCgCggGCGCCcGCGc -3'
miRNA:   3'- gUGA--UGCUCGUGUCG-Ga-CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 134550 0.75 0.285293
Target:  5'- gGCUgcaGCGGGcCGCGGCCUGCcggccgcgGCCUGCGc -3'
miRNA:   3'- gUGA---UGCUC-GUGUCGGACG--------CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 89842 0.75 0.277949
Target:  5'- gCGCUucGCGAGCcccaaguACAGCCUGCGCCUc-- -3'
miRNA:   3'- -GUGA--UGCUCG-------UGUCGGACGCGGAcgu -5'
23558 3' -57.9 NC_005261.1 + 121662 0.78 0.197767
Target:  5'- gACUACGAGCAgAGCaaggucCUGCGCCUGaCGu -3'
miRNA:   3'- gUGAUGCUCGUgUCG------GACGCGGAC-GU- -5'
23558 3' -57.9 NC_005261.1 + 74788 0.78 0.20279
Target:  5'- gCGCUcgGCGGGCGCGGCCUaCGCCgGCGa -3'
miRNA:   3'- -GUGA--UGCUCGUGUCGGAcGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 107891 0.77 0.213167
Target:  5'- gGCcGCGAGCGCGGCCgccagccGCGCCgGCAc -3'
miRNA:   3'- gUGaUGCUCGUGUCGGa------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 4605 0.77 0.23529
Target:  5'- gCGCgGCGAGCGCGGCCcacaGCGCCaGCGc -3'
miRNA:   3'- -GUGaUGCUCGUGUCGGa---CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 80243 0.77 0.23529
Target:  5'- gCGCUuuuugGCG-GCGCGGCCgcgcGCGCCUGCGu -3'
miRNA:   3'- -GUGA-----UGCuCGUGUCGGa---CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 123429 0.76 0.241115
Target:  5'- cCGCggACGuGCGCAGCCUGCGggagcggcaCCUGCGc -3'
miRNA:   3'- -GUGa-UGCuCGUGUCGGACGC---------GGACGU- -5'
23558 3' -57.9 NC_005261.1 + 7702 0.76 0.25931
Target:  5'- aCGCgACGAGCGggcgcgcuuCGGCCaGCGCCUGCGc -3'
miRNA:   3'- -GUGaUGCUCGU---------GUCGGaCGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 122993 0.75 0.272052
Target:  5'- cCACUGCGAGCGgGGCCUcaaCGCCgGCu -3'
miRNA:   3'- -GUGAUGCUCGUgUCGGAc--GCGGaCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.