miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 226 0.7 0.561985
Target:  5'- gGCUGCGGGCcgccGCAGCC-GCcGCC-GCAg -3'
miRNA:   3'- gUGAUGCUCG----UGUCGGaCG-CGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 253 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 289 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 1161 0.66 0.783859
Target:  5'- cCGCcAUGGGUGCccgcGCCUccGCGCCUGCc -3'
miRNA:   3'- -GUGaUGCUCGUGu---CGGA--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 1324 0.71 0.482789
Target:  5'- gCGCUcCGGGaCGCcGCCgcgccGCGCCUGCAc -3'
miRNA:   3'- -GUGAuGCUC-GUGuCGGa----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 1430 0.7 0.531754
Target:  5'- gGCUACGAGC-CcGCCacUG-GCCUGCAc -3'
miRNA:   3'- gUGAUGCUCGuGuCGG--ACgCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 1947 0.68 0.664908
Target:  5'- gCACcGCGGcGCGCAGgUacacgUGCGCCUGCc -3'
miRNA:   3'- -GUGaUGCU-CGUGUCgG-----ACGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 3374 0.77 0.213167
Target:  5'- gGCcGCGAGCGCGGCCgccagccGCGCCgGCAc -3'
miRNA:   3'- gUGaUGCUCGUGUCGGa------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 3720 0.71 0.492416
Target:  5'- aGCUGCaGGCGCAGgCUGUGCUcguagUGCAg -3'
miRNA:   3'- gUGAUGcUCGUGUCgGACGCGG-----ACGU- -5'
23558 3' -57.9 NC_005261.1 + 3891 0.74 0.343316
Target:  5'- aGCUcgGCGAGCGCGGCgCggGCGCCcGCGc -3'
miRNA:   3'- gUGA--UGCUCGUGUCG-Ga-CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 4129 0.68 0.633939
Target:  5'- gGCgGCGAGCGCGcGCCggcGCGCCgagaGCu -3'
miRNA:   3'- gUGaUGCUCGUGU-CGGa--CGCGGa---CGu -5'
23558 3' -57.9 NC_005261.1 + 4485 0.66 0.793091
Target:  5'- gCGCcGCG-GCGUAGCCUGCGCggGCc -3'
miRNA:   3'- -GUGaUGCuCGUGUCGGACGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 4605 0.77 0.23529
Target:  5'- gCGCgGCGAGCGCGGCCcacaGCGCCaGCGc -3'
miRNA:   3'- -GUGaUGCUCGUGUCGGa---CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 5862 0.73 0.400689
Target:  5'- gCGCcGCGAGCGCGGCgaGCGCgCcGCGg -3'
miRNA:   3'- -GUGaUGCUCGUGUCGgaCGCG-GaCGU- -5'
23558 3' -57.9 NC_005261.1 + 7065 0.68 0.685433
Target:  5'- cCGCUGCGgcAGCagaagGCGGCgaGCGCC-GCAa -3'
miRNA:   3'- -GUGAUGC--UCG-----UGUCGgaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 7588 0.66 0.783859
Target:  5'- gCGCgucgGCGAGCGCAcgcgcGCCccGCGCgCUGUu -3'
miRNA:   3'- -GUGa---UGCUCGUGU-----CGGa-CGCG-GACGu -5'
23558 3' -57.9 NC_005261.1 + 7702 0.76 0.25931
Target:  5'- aCGCgACGAGCGggcgcgcuuCGGCCaGCGCCUGCGc -3'
miRNA:   3'- -GUGaUGCUCGU---------GUCGGaCGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 7894 0.67 0.743671
Target:  5'- gCGCgucccCGAGCGCGGCCgggccguccaugGCG-CUGCAg -3'
miRNA:   3'- -GUGau---GCUCGUGUCGGa-----------CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 9040 0.69 0.613272
Target:  5'- aGCUGCGccacGCGCuGGCCUGCGgCaGCAa -3'
miRNA:   3'- gUGAUGCu---CGUG-UCGGACGCgGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 9179 0.67 0.695632
Target:  5'- aCACguaGGGCGCGGCagcguggGCGUCUGCc -3'
miRNA:   3'- -GUGaugCUCGUGUCGga-----CGCGGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.