Results 1 - 20 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23558 | 3' | -57.9 | NC_005261.1 | + | 134505 | 1.08 | 0.001611 |
Target: 5'- gCACUACGAGCACAGCCUGCGCCUGCAg -3' miRNA: 3'- -GUGAUGCUCGUGUCGGACGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 132859 | 0.94 | 0.016019 |
Target: 5'- aCGC-ACGGGCACAGCCUGCGCCUGCc -3' miRNA: 3'- -GUGaUGCUCGUGUCGGACGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 39695 | 0.78 | 0.191401 |
Target: 5'- ---cGCGGGCGCAGCCUaccggccggaucucGCGCCUGCc -3' miRNA: 3'- gugaUGCUCGUGUCGGA--------------CGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 121662 | 0.78 | 0.197767 |
Target: 5'- gACUACGAGCAgAGCaaggucCUGCGCCUGaCGu -3' miRNA: 3'- gUGAUGCUCGUgUCG------GACGCGGAC-GU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 74788 | 0.78 | 0.20279 |
Target: 5'- gCGCUcgGCGGGCGCGGCCUaCGCCgGCGa -3' miRNA: 3'- -GUGA--UGCUCGUGUCGGAcGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 3374 | 0.77 | 0.213167 |
Target: 5'- gGCcGCGAGCGCGGCCgccagccGCGCCgGCAc -3' miRNA: 3'- gUGaUGCUCGUGUCGGa------CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 107891 | 0.77 | 0.213167 |
Target: 5'- gGCcGCGAGCGCGGCCgccagccGCGCCgGCAc -3' miRNA: 3'- gUGaUGCUCGUGUCGGa------CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 46573 | 0.77 | 0.223997 |
Target: 5'- uGCUGCGAGCGCGGCCUcGCGCgacacgGCc -3' miRNA: 3'- gUGAUGCUCGUGUCGGA-CGCGga----CGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 80243 | 0.77 | 0.23529 |
Target: 5'- gCGCUuuuugGCG-GCGCGGCCgcgcGCGCCUGCGu -3' miRNA: 3'- -GUGA-----UGCuCGUGUCGGa---CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 4605 | 0.77 | 0.23529 |
Target: 5'- gCGCgGCGAGCGCGGCCcacaGCGCCaGCGc -3' miRNA: 3'- -GUGaUGCUCGUGUCGGa---CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 72458 | 0.77 | 0.23529 |
Target: 5'- cCGCgGCGAGCGCGGCgaGCGCgaGCGc -3' miRNA: 3'- -GUGaUGCUCGUGUCGgaCGCGgaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 76179 | 0.76 | 0.241115 |
Target: 5'- gCAgUACGAGCGgGGCCUGgGCgUGCu -3' miRNA: 3'- -GUgAUGCUCGUgUCGGACgCGgACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 123429 | 0.76 | 0.241115 |
Target: 5'- cCGCggACGuGCGCAGCCUGCGggagcggcaCCUGCGc -3' miRNA: 3'- -GUGa-UGCuCGUGUCGGACGC---------GGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 92587 | 0.76 | 0.247058 |
Target: 5'- cCACgcGCGAGCGCAGCCgcucgcgGCGCgUGCc -3' miRNA: 3'- -GUGa-UGCUCGUGUCGGa------CGCGgACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 7702 | 0.76 | 0.25931 |
Target: 5'- aCGCgACGAGCGggcgcgcuuCGGCCaGCGCCUGCGc -3' miRNA: 3'- -GUGaUGCUCGU---------GUCGGaCGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 93908 | 0.76 | 0.265619 |
Target: 5'- gACUGCGGGCGCggcgcccgcgGGCUUGCGCCguccGCGg -3' miRNA: 3'- gUGAUGCUCGUG----------UCGGACGCGGa---CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 122993 | 0.75 | 0.272052 |
Target: 5'- cCACUGCGAGCGgGGCCUcaaCGCCgGCu -3' miRNA: 3'- -GUGAUGCUCGUgUCGGAc--GCGGaCGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 89842 | 0.75 | 0.277949 |
Target: 5'- gCGCUucGCGAGCcccaaguACAGCCUGCGCCUc-- -3' miRNA: 3'- -GUGA--UGCUCG-------UGUCGGACGCGGAcgu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 30032 | 0.75 | 0.285293 |
Target: 5'- gGCUgcaGCGGGcCGCGGCCUGCcggccgcgGCCUGCGc -3' miRNA: 3'- gUGA---UGCUC-GUGUCGGACG--------CGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134550 | 0.75 | 0.285293 |
Target: 5'- gGCUgcaGCGGGcCGCGGCCUGCcggccgcgGCCUGCGc -3' miRNA: 3'- gUGA---UGCUC-GUGUCGGACG--------CGGACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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