miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 123210 0.75 0.292102
Target:  5'- cCGCcGCGuaAGCGCGGCCUGCcGCCUaGCGg -3'
miRNA:   3'- -GUGaUGC--UCGUGUCGGACG-CGGA-CGU- -5'
23558 3' -57.9 NC_005261.1 + 118887 0.75 0.306099
Target:  5'- cCACcGCGGGCGCgcugguGGCCUGCGUCUGgGu -3'
miRNA:   3'- -GUGaUGCUCGUG------UCGGACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 71107 0.74 0.320604
Target:  5'- gUAC-ACGGcGCGCAGCUUGCGCCcGCGc -3'
miRNA:   3'- -GUGaUGCU-CGUGUCGGACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 3891 0.74 0.343316
Target:  5'- aGCUcgGCGAGCGCGGCgCggGCGCCcGCGc -3'
miRNA:   3'- gUGA--UGCUCGUGUCG-Ga-CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 38988 0.74 0.343316
Target:  5'- aCGCggcccgGCGGGCGCGacGCCgacGCGCCUGCc -3'
miRNA:   3'- -GUGa-----UGCUCGUGU--CGGa--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 108408 0.74 0.343316
Target:  5'- aGCUcgGCGAGCGCGGCgCggGCGCCcGCGc -3'
miRNA:   3'- gUGA--UGCUCGUGUCG-Ga-CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 15498 0.73 0.359089
Target:  5'- uCGCUGCGGGCGgGGCgUGUGUCgGCGu -3'
miRNA:   3'- -GUGAUGCUCGUgUCGgACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 91448 0.73 0.367164
Target:  5'- gCGCUGCGcGGCACGGCCccgcccGCGCCUcccaGCGg -3'
miRNA:   3'- -GUGAUGC-UCGUGUCGGa-----CGCGGA----CGU- -5'
23558 3' -57.9 NC_005261.1 + 68259 0.73 0.375362
Target:  5'- gACUGCcuGGCGC-GCCUGCGCCcGCGc -3'
miRNA:   3'- gUGAUGc-UCGUGuCGGACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 75404 0.73 0.383684
Target:  5'- gACga-GGGCGCGGCCcgGCGCgUGCAg -3'
miRNA:   3'- gUGaugCUCGUGUCGGa-CGCGgACGU- -5'
23558 3' -57.9 NC_005261.1 + 5862 0.73 0.400689
Target:  5'- gCGCcGCGAGCGCGGCgaGCGCgCcGCGg -3'
miRNA:   3'- -GUGaUGCUCGUGUCGgaCGCG-GaCGU- -5'
23558 3' -57.9 NC_005261.1 + 95963 0.73 0.400689
Target:  5'- gGCUGCuGGGCGCGGCCgccucGCGCggGCAg -3'
miRNA:   3'- gUGAUG-CUCGUGUCGGa----CGCGgaCGU- -5'
23558 3' -57.9 NC_005261.1 + 90649 0.72 0.40937
Target:  5'- uCGC-GCGcGCGCGGCuCUGCGCCaUGCGc -3'
miRNA:   3'- -GUGaUGCuCGUGUCG-GACGCGG-ACGU- -5'
23558 3' -57.9 NC_005261.1 + 83383 0.72 0.40937
Target:  5'- gCGCgGCGAGCGCGGCCUcgGCCgagGCGa -3'
miRNA:   3'- -GUGaUGCUCGUGUCGGAcgCGGa--CGU- -5'
23558 3' -57.9 NC_005261.1 + 30717 0.72 0.417283
Target:  5'- gCGCUGCccuucGGCGCGGCCUGCGUggcgcagCUGCu -3'
miRNA:   3'- -GUGAUGc----UCGUGUCGGACGCG-------GACGu -5'
23558 3' -57.9 NC_005261.1 + 123003 0.72 0.418168
Target:  5'- cCACUACGGcCGCGGCCgugGCGUCcGCGa -3'
miRNA:   3'- -GUGAUGCUcGUGUCGGa--CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 65271 0.72 0.427079
Target:  5'- cCGCggcgGCGGGCGCgAGCCgGUGCCgGCGc -3'
miRNA:   3'- -GUGa---UGCUCGUG-UCGGaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 77878 0.72 0.436102
Target:  5'- gCACUGCcuGGcGCGCGGCCgcgGCGCC-GCAa -3'
miRNA:   3'- -GUGAUG--CU-CGUGUCGGa--CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 62403 0.72 0.454472
Target:  5'- cCACcucccCGGGCGCGGCC-GCGCCggGCAc -3'
miRNA:   3'- -GUGau---GCUCGUGUCGGaCGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 75493 0.72 0.454472
Target:  5'- cCGCUACGAGCGCGGg--GCGCUggagGCGc -3'
miRNA:   3'- -GUGAUGCUCGUGUCggaCGCGGa---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.