miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 115185 0.66 0.783859
Target:  5'- gCAC-GCGcuucAGCACGGCCcaGCGCCcgUGCGu -3'
miRNA:   3'- -GUGaUGC----UCGUGUCGGa-CGCGG--ACGU- -5'
23558 3' -57.9 NC_005261.1 + 45869 0.66 0.783859
Target:  5'- gCAUUGgGAGCuGCuGCCc-CGCCUGCAc -3'
miRNA:   3'- -GUGAUgCUCG-UGuCGGacGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 7588 0.66 0.783859
Target:  5'- gCGCgucgGCGAGCGCAcgcgcGCCccGCGCgCUGUu -3'
miRNA:   3'- -GUGa---UGCUCGUGU-----CGGa-CGCG-GACGu -5'
23558 3' -57.9 NC_005261.1 + 1161 0.66 0.783859
Target:  5'- cCGCcAUGGGUGCccgcGCCUccGCGCCUGCc -3'
miRNA:   3'- -GUGaUGCUCGUGu---CGGA--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 11710 0.66 0.783859
Target:  5'- gCGCgGCGGGCGCGGgCgcccagGCagaccGCCUGCGg -3'
miRNA:   3'- -GUGaUGCUCGUGUCgGa-----CG-----CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 31482 0.66 0.783859
Target:  5'- aGCUcgugGCGGGCGCGGag-GCGCCgggGCu -3'
miRNA:   3'- gUGA----UGCUCGUGUCggaCGCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 123378 0.66 0.783859
Target:  5'- aACUGCGcgauGCGCcgccGCCUGCuGCCgUGCu -3'
miRNA:   3'- gUGAUGCu---CGUGu---CGGACG-CGG-ACGu -5'
23558 3' -57.9 NC_005261.1 + 86486 0.66 0.783859
Target:  5'- uCACgGCcAGCgGCAGCCcggGgGCCUGCGu -3'
miRNA:   3'- -GUGaUGcUCG-UGUCGGa--CgCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 126060 0.66 0.783859
Target:  5'- gGCgGCG-GCGCuGGCCUGUgcggggcuugggGCCUGCGc -3'
miRNA:   3'- gUGaUGCuCGUG-UCGGACG------------CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 56810 0.66 0.774487
Target:  5'- gGCcgACGA-CGCcGCCUGUGCCUGgGg -3'
miRNA:   3'- gUGa-UGCUcGUGuCGGACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 37984 0.66 0.774487
Target:  5'- gACUGgGGGCugGCAGaCgUGCGCCcgGCGg -3'
miRNA:   3'- gUGAUgCUCG--UGUC-GgACGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 62880 0.66 0.774487
Target:  5'- --aUGCGcGGCGCAGCCcGCGCgagGCGg -3'
miRNA:   3'- gugAUGC-UCGUGUCGGaCGCGga-CGU- -5'
23558 3' -57.9 NC_005261.1 + 35752 0.66 0.774487
Target:  5'- gCGCgGCG-GCGC-GCCgaggagguccgGCGCCUGCGc -3'
miRNA:   3'- -GUGaUGCuCGUGuCGGa----------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 121646 0.66 0.774487
Target:  5'- cCGCcgGCGAGCGCGGgCUguccGCGUCgGCGu -3'
miRNA:   3'- -GUGa-UGCUCGUGUCgGA----CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 136170 0.66 0.774487
Target:  5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3'
miRNA:   3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5'
23558 3' -57.9 NC_005261.1 + 59988 0.66 0.774487
Target:  5'- cCGC--CGGGuCGCAcGCCUGCGgCUGCu -3'
miRNA:   3'- -GUGauGCUC-GUGU-CGGACGCgGACGu -5'
23558 3' -57.9 NC_005261.1 + 79311 0.66 0.774487
Target:  5'- gGCgugcGCGGGCGCGcuggugcgcgcGCUggcgcGCGCCUGCGa -3'
miRNA:   3'- gUGa---UGCUCGUGU-----------CGGa----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 125792 0.66 0.774487
Target:  5'- cCGCUGCGAaCGgGGCUUGgGCCgggGCc -3'
miRNA:   3'- -GUGAUGCUcGUgUCGGACgCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 133649 0.66 0.774487
Target:  5'- cCGCUgcGCGAGCGCuGCgUGCucGCCUccgGCGc -3'
miRNA:   3'- -GUGA--UGCUCGUGuCGgACG--CGGA---CGU- -5'
23558 3' -57.9 NC_005261.1 + 96738 0.66 0.774487
Target:  5'- gCGCggcGCGAGUccCGGCCUGgGCC-GCGg -3'
miRNA:   3'- -GUGa--UGCUCGu-GUCGGACgCGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.