Results 41 - 60 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23558 | 3' | -57.9 | NC_005261.1 | + | 102948 | 0.71 | 0.463813 |
Target: 5'- cCGCUGCG-GCgGCGGCCgcggGCGCC-GCGg -3' miRNA: 3'- -GUGAUGCuCG-UGUCGGa---CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 29680 | 0.71 | 0.463813 |
Target: 5'- gCGCUGUGGGCGCuGCCgcacgugGCGgCCUGCGu -3' miRNA: 3'- -GUGAUGCUCGUGuCGGa------CGC-GGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134060 | 0.71 | 0.463813 |
Target: 5'- aGCUcGCGGGCccggaccuGCAGCUggcGCGCCUGCu -3' miRNA: 3'- gUGA-UGCUCG--------UGUCGGa--CGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 16840 | 0.71 | 0.463813 |
Target: 5'- gCACU-CGGGCAgGcGCCgccgccgcgggGCGCCUGCAg -3' miRNA: 3'- -GUGAuGCUCGUgU-CGGa----------CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 87873 | 0.71 | 0.463813 |
Target: 5'- cUACgugaugACGGGCGCGGCCUaccgGCGgCUGCu -3' miRNA: 3'- -GUGa-----UGCUCGUGUCGGA----CGCgGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 29543 | 0.71 | 0.463813 |
Target: 5'- aGCUcGCGGGCccggaccuGCAGCUggcGCGCCUGCu -3' miRNA: 3'- gUGA-UGCUCG--------UGUCGGa--CGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 37612 | 0.71 | 0.463813 |
Target: 5'- cCugUGCGAGCGgGaCCUGCaCCUGCGc -3' miRNA: 3'- -GugAUGCUCGUgUcGGACGcGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134197 | 0.71 | 0.463813 |
Target: 5'- gCGCUGUGGGCGCuGCCgcacgugGCGgCCUGCGu -3' miRNA: 3'- -GUGAUGCUCGUGuCGGa------CGC-GGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 29861 | 0.71 | 0.473253 |
Target: 5'- gCGCggacGCGGGCAgGGa-UGCGCCUGCGa -3' miRNA: 3'- -GUGa---UGCUCGUgUCggACGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 1324 | 0.71 | 0.482789 |
Target: 5'- gCGCUcCGGGaCGCcGCCgcgccGCGCCUGCAc -3' miRNA: 3'- -GUGAuGCUC-GUGuCGGa----CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 95783 | 0.71 | 0.482789 |
Target: 5'- gCGCUGCGccGGCGCgcugcuAGCCgGCGCCgGCGg -3' miRNA: 3'- -GUGAUGC--UCGUG------UCGGaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 105841 | 0.71 | 0.482789 |
Target: 5'- gCGCUcCGGGaCGCcGCCgcgccGCGCCUGCAc -3' miRNA: 3'- -GUGAuGCUC-GUGuCGGa----CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 94981 | 0.71 | 0.491449 |
Target: 5'- gCACUcaACGAGCgacaucuGCAGCgUGCGCCUcCAg -3' miRNA: 3'- -GUGA--UGCUCG-------UGUCGgACGCGGAcGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 3720 | 0.71 | 0.492416 |
Target: 5'- aGCUGCaGGCGCAGgCUGUGCUcguagUGCAg -3' miRNA: 3'- gUGAUGcUCGUGUCgGACGCGG-----ACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 123241 | 0.71 | 0.492416 |
Target: 5'- gCGCUcCGGGCGCGGCCgGCGCg-GCc -3' miRNA: 3'- -GUGAuGCUCGUGUCGGaCGCGgaCGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 133393 | 0.71 | 0.492416 |
Target: 5'- gGCUGCG-GCGCGgacgccgccGCCUGCGCCcaacGCGg -3' miRNA: 3'- gUGAUGCuCGUGU---------CGGACGCGGa---CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 28876 | 0.71 | 0.492416 |
Target: 5'- gGCUGCG-GCGCGgacgccgccGCCUGCGCCcaacGCGg -3' miRNA: 3'- gUGAUGCuCGUGU---------CGGACGCGGa---CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 126618 | 0.71 | 0.502131 |
Target: 5'- cCGCUcuucccGCGcGCGCAGCUcugccagaaaaUGCGCCUGUAc -3' miRNA: 3'- -GUGA------UGCuCGUGUCGG-----------ACGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 106868 | 0.71 | 0.502131 |
Target: 5'- ---gGCGGGCguccGCGGCCUcgcacuccugcaGCGCCUGCGu -3' miRNA: 3'- gugaUGCUCG----UGUCGGA------------CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 113205 | 0.71 | 0.502131 |
Target: 5'- gCugUGCGAGUACGGCUgcGCGCCguucgaggacuuUGCGc -3' miRNA: 3'- -GugAUGCUCGUGUCGGa-CGCGG------------ACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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