Results 41 - 60 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23558 | 3' | -57.9 | NC_005261.1 | + | 80243 | 0.77 | 0.23529 |
Target: 5'- gCGCUuuuugGCG-GCGCGGCCgcgcGCGCCUGCGu -3' miRNA: 3'- -GUGA-----UGCuCGUGUCGGa---CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 4605 | 0.77 | 0.23529 |
Target: 5'- gCGCgGCGAGCGCGGCCcacaGCGCCaGCGc -3' miRNA: 3'- -GUGaUGCUCGUGUCGGa---CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 107891 | 0.77 | 0.213167 |
Target: 5'- gGCcGCGAGCGCGGCCgccagccGCGCCgGCAc -3' miRNA: 3'- gUGaUGCUCGUGUCGGa------CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 74788 | 0.78 | 0.20279 |
Target: 5'- gCGCUcgGCGGGCGCGGCCUaCGCCgGCGa -3' miRNA: 3'- -GUGA--UGCUCGUGUCGGAcGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 121662 | 0.78 | 0.197767 |
Target: 5'- gACUACGAGCAgAGCaaggucCUGCGCCUGaCGu -3' miRNA: 3'- gUGAUGCUCGUgUCG------GACGCGGAC-GU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 5862 | 0.73 | 0.400689 |
Target: 5'- gCGCcGCGAGCGCGGCgaGCGCgCcGCGg -3' miRNA: 3'- -GUGaUGCUCGUGUCGgaCGCG-GaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 90649 | 0.72 | 0.40937 |
Target: 5'- uCGC-GCGcGCGCGGCuCUGCGCCaUGCGc -3' miRNA: 3'- -GUGaUGCuCGUGUCG-GACGCGG-ACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 3720 | 0.71 | 0.492416 |
Target: 5'- aGCUGCaGGCGCAGgCUGUGCUcguagUGCAg -3' miRNA: 3'- gUGAUGcUCGUGUCgGACGCGG-----ACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 94981 | 0.71 | 0.491449 |
Target: 5'- gCACUcaACGAGCgacaucuGCAGCgUGCGCCUcCAg -3' miRNA: 3'- -GUGA--UGCUCG-------UGUCGgACGCGGAcGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 105841 | 0.71 | 0.482789 |
Target: 5'- gCGCUcCGGGaCGCcGCCgcgccGCGCCUGCAc -3' miRNA: 3'- -GUGAuGCUC-GUGuCGGa----CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 29861 | 0.71 | 0.473253 |
Target: 5'- gCGCggacGCGGGCAgGGa-UGCGCCUGCGa -3' miRNA: 3'- -GUGa---UGCUCGUgUCggACGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 37612 | 0.71 | 0.463813 |
Target: 5'- cCugUGCGAGCGgGaCCUGCaCCUGCGc -3' miRNA: 3'- -GugAUGCUCGUgUcGGACGcGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134197 | 0.71 | 0.463813 |
Target: 5'- gCGCUGUGGGCGCuGCCgcacgugGCGgCCUGCGu -3' miRNA: 3'- -GUGAUGCUCGUGuCGGa------CGC-GGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 134060 | 0.71 | 0.463813 |
Target: 5'- aGCUcGCGGGCccggaccuGCAGCUggcGCGCCUGCu -3' miRNA: 3'- gUGA-UGCUCG--------UGUCGGa--CGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 87873 | 0.71 | 0.463813 |
Target: 5'- cUACgugaugACGGGCGCGGCCUaccgGCGgCUGCu -3' miRNA: 3'- -GUGa-----UGCUCGUGUCGGA----CGCgGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 16840 | 0.71 | 0.463813 |
Target: 5'- gCACU-CGGGCAgGcGCCgccgccgcgggGCGCCUGCAg -3' miRNA: 3'- -GUGAuGCUCGUgU-CGGa----------CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 62403 | 0.72 | 0.454472 |
Target: 5'- cCACcucccCGGGCGCGGCC-GCGCCggGCAc -3' miRNA: 3'- -GUGau---GCUCGUGUCGGaCGCGGa-CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 77878 | 0.72 | 0.436102 |
Target: 5'- gCACUGCcuGGcGCGCGGCCgcgGCGCC-GCAa -3' miRNA: 3'- -GUGAUG--CU-CGUGUCGGa--CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 65271 | 0.72 | 0.427079 |
Target: 5'- cCGCggcgGCGGGCGCgAGCCgGUGCCgGCGc -3' miRNA: 3'- -GUGa---UGCUCGUG-UCGGaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 30717 | 0.72 | 0.417283 |
Target: 5'- gCGCUGCccuucGGCGCGGCCUGCGUggcgcagCUGCu -3' miRNA: 3'- -GUGAUGc----UCGUGUCGGACGCG-------GACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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