miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 62403 0.72 0.454472
Target:  5'- cCACcucccCGGGCGCGGCC-GCGCCggGCAc -3'
miRNA:   3'- -GUGau---GCUCGUGUCGGaCGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 16840 0.71 0.463813
Target:  5'- gCACU-CGGGCAgGcGCCgccgccgcgggGCGCCUGCAg -3'
miRNA:   3'- -GUGAuGCUCGUgU-CGGa----------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 82865 0.71 0.502131
Target:  5'- gGCgGCGGGC-CAGgCUGgGCCUGCc -3'
miRNA:   3'- gUGaUGCUCGuGUCgGACgCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 29005 0.7 0.521805
Target:  5'- gCGCUGC-AGCGCGcggcgugccgcGCCUacgaGCGCCUGCGc -3'
miRNA:   3'- -GUGAUGcUCGUGU-----------CGGA----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 14978 0.7 0.521805
Target:  5'- uCACgggcgAUGGGCGgGGCCcGCGCCUGg- -3'
miRNA:   3'- -GUGa----UGCUCGUgUCGGaCGCGGACgu -5'
23558 3' -57.9 NC_005261.1 + 60242 0.7 0.531754
Target:  5'- uGCUGCGgcaGGCACGGCacggGCGCUggggGCAg -3'
miRNA:   3'- gUGAUGC---UCGUGUCGga--CGCGGa---CGU- -5'
23558 3' -57.9 NC_005261.1 + 96439 0.7 0.531754
Target:  5'- aCACU-CGAGUACGGCCUGC-CCgUGaCGg -3'
miRNA:   3'- -GUGAuGCUCGUGUCGGACGcGG-AC-GU- -5'
23558 3' -57.9 NC_005261.1 + 1430 0.7 0.531754
Target:  5'- gGCUACGAGC-CcGCCacUG-GCCUGCAc -3'
miRNA:   3'- gUGAUGCUCGuGuCGG--ACgCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 54539 0.7 0.531754
Target:  5'- gGCUGCG-GCGCcGCCUcggcgGCGCgCUGCGc -3'
miRNA:   3'- gUGAUGCuCGUGuCGGA-----CGCG-GACGU- -5'
23558 3' -57.9 NC_005261.1 + 79971 0.7 0.55185
Target:  5'- gCGCgGCGAGCGCGGCgCgGCGCg-GCAu -3'
miRNA:   3'- -GUGaUGCUCGUGUCG-GaCGCGgaCGU- -5'
23558 3' -57.9 NC_005261.1 + 133393 0.71 0.492416
Target:  5'- gGCUGCG-GCGCGgacgccgccGCCUGCGCCcaacGCGg -3'
miRNA:   3'- gUGAUGCuCGUGU---------CGGACGCGGa---CGU- -5'
23558 3' -57.9 NC_005261.1 + 123241 0.71 0.492416
Target:  5'- gCGCUcCGGGCGCGGCCgGCGCg-GCc -3'
miRNA:   3'- -GUGAuGCUCGUGUCGGaCGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 87873 0.71 0.463813
Target:  5'- cUACgugaugACGGGCGCGGCCUaccgGCGgCUGCu -3'
miRNA:   3'- -GUGa-----UGCUCGUGUCGGA----CGCgGACGu -5'
23558 3' -57.9 NC_005261.1 + 134060 0.71 0.463813
Target:  5'- aGCUcGCGGGCccggaccuGCAGCUggcGCGCCUGCu -3'
miRNA:   3'- gUGA-UGCUCG--------UGUCGGa--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 134197 0.71 0.463813
Target:  5'- gCGCUGUGGGCGCuGCCgcacgugGCGgCCUGCGu -3'
miRNA:   3'- -GUGAUGCUCGUGuCGGa------CGC-GGACGU- -5'
23558 3' -57.9 NC_005261.1 + 37612 0.71 0.463813
Target:  5'- cCugUGCGAGCGgGaCCUGCaCCUGCGc -3'
miRNA:   3'- -GugAUGCUCGUgUcGGACGcGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 29861 0.71 0.473253
Target:  5'- gCGCggacGCGGGCAgGGa-UGCGCCUGCGa -3'
miRNA:   3'- -GUGa---UGCUCGUgUCggACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 105841 0.71 0.482789
Target:  5'- gCGCUcCGGGaCGCcGCCgcgccGCGCCUGCAc -3'
miRNA:   3'- -GUGAuGCUC-GUGuCGGa----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 94981 0.71 0.491449
Target:  5'- gCACUcaACGAGCgacaucuGCAGCgUGCGCCUcCAg -3'
miRNA:   3'- -GUGA--UGCUCG-------UGUCGgACGCGGAcGU- -5'
23558 3' -57.9 NC_005261.1 + 3720 0.71 0.492416
Target:  5'- aGCUGCaGGCGCAGgCUGUGCUcguagUGCAg -3'
miRNA:   3'- gUGAUGcUCGUGUCgGACGCGG-----ACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.