miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 30717 0.72 0.417283
Target:  5'- gCGCUGCccuucGGCGCGGCCUGCGUggcgcagCUGCu -3'
miRNA:   3'- -GUGAUGc----UCGUGUCGGACGCG-------GACGu -5'
23558 3' -57.9 NC_005261.1 + 30913 0.68 0.675188
Target:  5'- uGCUggGCGAGCugcacgcgGCGGCCUggccgcggcggaGUGCCUGCc -3'
miRNA:   3'- gUGA--UGCUCG--------UGUCGGA------------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 31439 0.66 0.755363
Target:  5'- gCGCUgguGCGGGCGCAGacgGCGCUgGCGc -3'
miRNA:   3'- -GUGA---UGCUCGUGUCggaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 31482 0.66 0.783859
Target:  5'- aGCUcgugGCGGGCGCGGag-GCGCCgggGCu -3'
miRNA:   3'- gUGA----UGCUCGUGUCggaCGCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 31653 0.66 0.774487
Target:  5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3'
miRNA:   3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5'
23558 3' -57.9 NC_005261.1 + 33380 0.7 0.561985
Target:  5'- gGCUGCGGGCcgccGCAGCC-GCcGCC-GCAg -3'
miRNA:   3'- gUGAUGCUCG----UGUCGGaCG-CGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 33779 0.67 0.735795
Target:  5'- cCGCgGCGAGCGCugGGCCccGCGCggGCGg -3'
miRNA:   3'- -GUGaUGCUCGUG--UCGGa-CGCGgaCGU- -5'
23558 3' -57.9 NC_005261.1 + 34031 0.67 0.735795
Target:  5'- uCACcgGCGcGGCGCGcGCgCUGCccuGCCUGCAc -3'
miRNA:   3'- -GUGa-UGC-UCGUGU-CG-GACG---CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 34417 0.69 0.613272
Target:  5'- ----gUGGcGCGCGGCCcGCGCCUGCc -3'
miRNA:   3'- gugauGCU-CGUGUCGGaCGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 34652 0.69 0.57217
Target:  5'- cCGCguuCGuGCGCAGCCUGCuGUUUGUg -3'
miRNA:   3'- -GUGau-GCuCGUGUCGGACG-CGGACGu -5'
23558 3' -57.9 NC_005261.1 + 35752 0.66 0.774487
Target:  5'- gCGCgGCG-GCGC-GCCgaggagguccgGCGCCUGCGc -3'
miRNA:   3'- -GUGaUGCuCGUGuCGGa----------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 35908 0.69 0.57217
Target:  5'- cCGCcGCGgcAGCGCGGCCccGCGCC-GCAg -3'
miRNA:   3'- -GUGaUGC--UCGUGUCGGa-CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 35940 0.67 0.725869
Target:  5'- gGCUACGAccCGCGGCCgcugGCGCg-GCAg -3'
miRNA:   3'- gUGAUGCUc-GUGUCGGa---CGCGgaCGU- -5'
23558 3' -57.9 NC_005261.1 + 36346 0.67 0.74563
Target:  5'- ---aGCGcGCGCGGCUggGCGCcCUGCGc -3'
miRNA:   3'- gugaUGCuCGUGUCGGa-CGCG-GACGU- -5'
23558 3' -57.9 NC_005261.1 + 36434 0.67 0.74563
Target:  5'- gACgUACGuGCGCAGCCc-CGCCgagGCGg -3'
miRNA:   3'- gUG-AUGCuCGUGUCGGacGCGGa--CGU- -5'
23558 3' -57.9 NC_005261.1 + 37128 0.66 0.793091
Target:  5'- gCGCcaagGCGcGCGCGGCC-GCG-CUGCAg -3'
miRNA:   3'- -GUGa---UGCuCGUGUCGGaCGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 37162 0.67 0.71586
Target:  5'- gCGCU-CGcGCGC-GCUUGCGCCUGg- -3'
miRNA:   3'- -GUGAuGCuCGUGuCGGACGCGGACgu -5'
23558 3' -57.9 NC_005261.1 + 37612 0.71 0.463813
Target:  5'- cCugUGCGAGCGgGaCCUGCaCCUGCGc -3'
miRNA:   3'- -GugAUGCUCGUgUcGGACGcGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 37984 0.66 0.774487
Target:  5'- gACUGgGGGCugGCAGaCgUGCGCCcgGCGg -3'
miRNA:   3'- gUGAUgCUCG--UGUC-GgACGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 38952 0.68 0.685433
Target:  5'- gGCcGCGGcGCGCGGgCUGCgcagcaacaagaGCCUGCAg -3'
miRNA:   3'- gUGaUGCU-CGUGUCgGACG------------CGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.