miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 20112 0.68 0.685433
Target:  5'- aGCggcGCGAGCcgGCGGCgCaGCGUCUGCGc -3'
miRNA:   3'- gUGa--UGCUCG--UGUCG-GaCGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 20138 0.7 0.521805
Target:  5'- gGCUccGCGAGCGCucaGGCC-GCGCCgGCu -3'
miRNA:   3'- gUGA--UGCUCGUG---UCGGaCGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 20560 0.66 0.755363
Target:  5'- gGCgGCGGGCugcGCAGCg-GCGCCgGCGg -3'
miRNA:   3'- gUGaUGCUCG---UGUCGgaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 21185 0.69 0.57217
Target:  5'- cCGCUggcGCGAGCGCGGCCgcgGaCGCUgGCc -3'
miRNA:   3'- -GUGA---UGCUCGUGUCGGa--C-GCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 21272 0.68 0.633939
Target:  5'- aGC-ACGAGgACGGCCUGUacGCCaUGCu -3'
miRNA:   3'- gUGaUGCUCgUGUCGGACG--CGG-ACGu -5'
23558 3' -57.9 NC_005261.1 + 21696 0.67 0.71586
Target:  5'- aCGCgcGCGGGCGCggagcggcgGGCCUcGCGCCgccGCGg -3'
miRNA:   3'- -GUGa-UGCUCGUG---------UCGGA-CGCGGa--CGU- -5'
23558 3' -57.9 NC_005261.1 + 21727 0.67 0.71586
Target:  5'- uGCUuCGAGCcgaucgacacGCGGCugCUGCGCCUGgAg -3'
miRNA:   3'- gUGAuGCUCG----------UGUCG--GACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 23189 0.67 0.735795
Target:  5'- gACaGCGAGCGC-GCCgcgGgGCCcGCAg -3'
miRNA:   3'- gUGaUGCUCGUGuCGGa--CgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 24885 0.69 0.613272
Target:  5'- aACUGCGcguuGUACAGCCcGUGCCgcGCGa -3'
miRNA:   3'- gUGAUGCu---CGUGUCGGaCGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 25538 0.67 0.735795
Target:  5'- uGC-ACGGGCACGGCCUcGaCGCCcaGCc -3'
miRNA:   3'- gUGaUGCUCGUGUCGGA-C-GCGGa-CGu -5'
23558 3' -57.9 NC_005261.1 + 28876 0.71 0.492416
Target:  5'- gGCUGCG-GCGCGgacgccgccGCCUGCGCCcaacGCGg -3'
miRNA:   3'- gUGAUGCuCGUGU---------CGGACGCGGa---CGU- -5'
23558 3' -57.9 NC_005261.1 + 29005 0.7 0.521805
Target:  5'- gCGCUGC-AGCGCGcggcgugccgcGCCUacgaGCGCCUGCGc -3'
miRNA:   3'- -GUGAUGcUCGUGU-----------CGGA----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 29059 0.67 0.735795
Target:  5'- gCGCUGCuAGCGgagaaccugccCGGCCUggugcugugGCGCCUGCc -3'
miRNA:   3'- -GUGAUGcUCGU-----------GUCGGA---------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 29371 0.67 0.735795
Target:  5'- cCGCUGCu-GCAgAGCCgcuuuCGCCUGCu -3'
miRNA:   3'- -GUGAUGcuCGUgUCGGac---GCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 29543 0.71 0.463813
Target:  5'- aGCUcGCGGGCccggaccuGCAGCUggcGCGCCUGCu -3'
miRNA:   3'- gUGA-UGCUCG--------UGUCGGa--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 29680 0.71 0.463813
Target:  5'- gCGCUGUGGGCGCuGCCgcacgugGCGgCCUGCGu -3'
miRNA:   3'- -GUGAUGCUCGUGuCGGa------CGC-GGACGU- -5'
23558 3' -57.9 NC_005261.1 + 29861 0.71 0.473253
Target:  5'- gCGCggacGCGGGCAgGGa-UGCGCCUGCGa -3'
miRNA:   3'- -GUGa---UGCUCGUgUCggACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 29921 0.66 0.793091
Target:  5'- gGCUgcGCGAGCugGcggacgcuGCgCUGCGgCCUGCc -3'
miRNA:   3'- gUGA--UGCUCGugU--------CG-GACGC-GGACGu -5'
23558 3' -57.9 NC_005261.1 + 30032 0.75 0.285293
Target:  5'- gGCUgcaGCGGGcCGCGGCCUGCcggccgcgGCCUGCGc -3'
miRNA:   3'- gUGA---UGCUC-GUGUCGGACG--------CGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 30180 0.66 0.755363
Target:  5'- gCGCUGCGcGCcgagGCGGCCgccGCGCUggagGCGg -3'
miRNA:   3'- -GUGAUGCuCG----UGUCGGa--CGCGGa---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.