miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 115185 0.66 0.783859
Target:  5'- gCAC-GCGcuucAGCACGGCCcaGCGCCcgUGCGu -3'
miRNA:   3'- -GUGaUGC----UCGUGUCGGa-CGCGG--ACGU- -5'
23558 3' -57.9 NC_005261.1 + 115034 0.66 0.754394
Target:  5'- cCGCUGCGGGCcccGCGGCgcgcucgCUgucgcccccggcGCGCCUGCc -3'
miRNA:   3'- -GUGAUGCUCG---UGUCG-------GA------------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 114657 0.66 0.755363
Target:  5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3'
miRNA:   3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5'
23558 3' -57.9 NC_005261.1 + 113205 0.71 0.502131
Target:  5'- gCugUGCGAGUACGGCUgcGCGCCguucgaggacuuUGCGc -3'
miRNA:   3'- -GugAUGCUCGUGUCGGa-CGCGG------------ACGU- -5'
23558 3' -57.9 NC_005261.1 + 111269 0.7 0.511929
Target:  5'- cCGCUgagaGCGAGCACccGGCCcGCGCCUuccGCc -3'
miRNA:   3'- -GUGA----UGCUCGUG--UCGGaCGCGGA---CGu -5'
23558 3' -57.9 NC_005261.1 + 110263 0.7 0.525777
Target:  5'- gGCUGCGGGC-CucccucguGGCCUuuuccuuccuggcggGCGCCUGCGc -3'
miRNA:   3'- gUGAUGCUCGuG--------UCGGA---------------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 109369 0.7 0.511929
Target:  5'- cCGCU-CGAGCGCGGCCcagaGgGCCcGCAc -3'
miRNA:   3'- -GUGAuGCUCGUGUCGGa---CgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 109327 0.68 0.664908
Target:  5'- ---cGCGAGCGCGGCCgcgGgGUCgGCGg -3'
miRNA:   3'- gugaUGCUCGUGUCGGa--CgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 109002 0.66 0.793091
Target:  5'- gCGCcGCG-GCGUAGCCUGCGCggGCc -3'
miRNA:   3'- -GUGaUGCuCGUGUCGGACGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 108408 0.74 0.343316
Target:  5'- aGCUcgGCGAGCGCGGCgCggGCGCCcGCGc -3'
miRNA:   3'- gUGA--UGCUCGUGUCG-Ga-CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 108388 0.66 0.793091
Target:  5'- cCGCgcccGCGcGCuccaGCAGCCgcgccaccGCGCCUGCGu -3'
miRNA:   3'- -GUGa---UGCuCG----UGUCGGa-------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 108192 0.68 0.644275
Target:  5'- gGCUcCGGGCGCgAGagCUGCGCCaGCAc -3'
miRNA:   3'- gUGAuGCUCGUG-UCg-GACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 107891 0.77 0.213167
Target:  5'- gGCcGCGAGCGCGGCCgccagccGCGCCgGCAc -3'
miRNA:   3'- gUGaUGCUCGUGUCGGa------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 107507 0.68 0.664908
Target:  5'- gGCU-CGGGCcugGCGGCCcgGCGCCgggGCu -3'
miRNA:   3'- gUGAuGCUCG---UGUCGGa-CGCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 106868 0.71 0.502131
Target:  5'- ---gGCGGGCguccGCGGCCUcgcacuccugcaGCGCCUGCGu -3'
miRNA:   3'- gugaUGCUCG----UGUCGGA------------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 106761 0.67 0.732826
Target:  5'- cCGCcACGAGCuugccgGCGGCCagcccagcgccgucUGCGCCcGCAc -3'
miRNA:   3'- -GUGaUGCUCG------UGUCGG--------------ACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 106464 0.68 0.664908
Target:  5'- gCACcGCGGcGCGCAGgUacacgUGCGCCUGCc -3'
miRNA:   3'- -GUGaUGCU-CGUGUCgG-----ACGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 105841 0.71 0.482789
Target:  5'- gCGCUcCGGGaCGCcGCCgcgccGCGCCUGCAc -3'
miRNA:   3'- -GUGAuGCUC-GUGuCGGa----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 104818 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 104783 0.68 0.675188
Target:  5'- gGCUGCGGG-GCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCUCgUGUCGGa-----CGCgGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.