miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 123378 0.66 0.783859
Target:  5'- aACUGCGcgauGCGCcgccGCCUGCuGCCgUGCu -3'
miRNA:   3'- gUGAUGCu---CGUGu---CGGACG-CGG-ACGu -5'
23558 3' -57.9 NC_005261.1 + 123241 0.71 0.492416
Target:  5'- gCGCUcCGGGCGCGGCCgGCGCg-GCc -3'
miRNA:   3'- -GUGAuGCUCGUGUCGGaCGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 123210 0.75 0.292102
Target:  5'- cCGCcGCGuaAGCGCGGCCUGCcGCCUaGCGg -3'
miRNA:   3'- -GUGaUGC--UCGUGUCGGACG-CGGA-CGU- -5'
23558 3' -57.9 NC_005261.1 + 123003 0.72 0.418168
Target:  5'- cCACUACGGcCGCGGCCgugGCGUCcGCGa -3'
miRNA:   3'- -GUGAUGCUcGUGUCGGa--CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 122993 0.75 0.272052
Target:  5'- cCACUGCGAGCGgGGCCUcaaCGCCgGCu -3'
miRNA:   3'- -GUGAUGCUCGUgUCGGAc--GCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 122665 0.66 0.755363
Target:  5'- gCGCgaaGAGCAucacguucguCAG-CUGCGCCUGCu -3'
miRNA:   3'- -GUGaugCUCGU----------GUCgGACGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 121662 0.78 0.197767
Target:  5'- gACUACGAGCAgAGCaaggucCUGCGCCUGaCGu -3'
miRNA:   3'- gUGAUGCUCGUgUCG------GACGCGGAC-GU- -5'
23558 3' -57.9 NC_005261.1 + 121646 0.66 0.774487
Target:  5'- cCGCcgGCGAGCGCGGgCUguccGCGUCgGCGu -3'
miRNA:   3'- -GUGa-UGCUCGUGUCgGA----CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 121213 0.7 0.55185
Target:  5'- aCGCgACGAGCGCGGCCgcgUGCGacaUGCu -3'
miRNA:   3'- -GUGaUGCUCGUGUCGG---ACGCgg-ACGu -5'
23558 3' -57.9 NC_005261.1 + 120629 0.68 0.685433
Target:  5'- -cCUGCuGGUgGCGGcCCUGUGCCUGCGg -3'
miRNA:   3'- guGAUGcUCG-UGUC-GGACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 120430 0.71 0.502131
Target:  5'- gGCUGgugaacauGCGCGGCgUGCGCCUGCu -3'
miRNA:   3'- gUGAUgcu-----CGUGUCGgACGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 120390 0.67 0.695632
Target:  5'- uCGCgcacCGAGCAgAGCg-GCGUCUGCGc -3'
miRNA:   3'- -GUGau--GCUCGUgUCGgaCGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 120093 0.68 0.644275
Target:  5'- cCAUcgGCGA-CugGGCCUGCGgCUGCu -3'
miRNA:   3'- -GUGa-UGCUcGugUCGGACGCgGACGu -5'
23558 3' -57.9 NC_005261.1 + 118887 0.75 0.306099
Target:  5'- cCACcGCGGGCGCgcugguGGCCUGCGUCUGgGu -3'
miRNA:   3'- -GUGaUGCUCGUG------UCGGACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 118821 0.68 0.664908
Target:  5'- gCGCccUGGGCGCGGCaCUGCcGCuCUGCGg -3'
miRNA:   3'- -GUGauGCUCGUGUCG-GACG-CG-GACGU- -5'
23558 3' -57.9 NC_005261.1 + 118723 0.68 0.664908
Target:  5'- uCGCggGCGGGCACGGCgUcGCGCUcGCc -3'
miRNA:   3'- -GUGa-UGCUCGUGUCGgA-CGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 118373 0.68 0.654601
Target:  5'- gCGCUGgGGcGCGCGGCCcgagGCGCUgGCGg -3'
miRNA:   3'- -GUGAUgCU-CGUGUCGGa---CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 116423 0.68 0.675188
Target:  5'- cCGCcGCGGGCcCGGCCcggccgGCGgCUGCGg -3'
miRNA:   3'- -GUGaUGCUCGuGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 115993 0.67 0.725869
Target:  5'- uCGCUgACGAGCcgcccgagGCGGCCUGagcCGCCgacgGCGc -3'
miRNA:   3'- -GUGA-UGCUCG--------UGUCGGAC---GCGGa---CGU- -5'
23558 3' -57.9 NC_005261.1 + 115568 0.68 0.654601
Target:  5'- gCACU-CGGGCGCcGCCcagGCGCCgccaGCGc -3'
miRNA:   3'- -GUGAuGCUCGUGuCGGa--CGCGGa---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.