miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 41861 0.66 0.764985
Target:  5'- --aUGCGAucGCGCGGCC-GCGCCagGCc -3'
miRNA:   3'- gugAUGCU--CGUGUCGGaCGCGGa-CGu -5'
23558 3' -57.9 NC_005261.1 + 1161 0.66 0.783859
Target:  5'- cCGCcAUGGGUGCccgcGCCUccGCGCCUGCc -3'
miRNA:   3'- -GUGaUGCUCGUGu---CGGA--CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 56810 0.66 0.774487
Target:  5'- gGCcgACGA-CGCcGCCUGUGCCUGgGg -3'
miRNA:   3'- gUGa-UGCUcGUGuCGGACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 59988 0.66 0.774487
Target:  5'- cCGC--CGGGuCGCAcGCCUGCGgCUGCu -3'
miRNA:   3'- -GUGauGCUC-GUGU-CGGACGCgGACGu -5'
23558 3' -57.9 NC_005261.1 + 31482 0.66 0.783859
Target:  5'- aGCUcgugGCGGGCGCGGag-GCGCCgggGCu -3'
miRNA:   3'- gUGA----UGCUCGUGUCggaCGCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 35752 0.66 0.774487
Target:  5'- gCGCgGCG-GCGC-GCCgaggagguccgGCGCCUGCGc -3'
miRNA:   3'- -GUGaUGCuCGUGuCGGa----------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 136170 0.66 0.774487
Target:  5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3'
miRNA:   3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5'
23558 3' -57.9 NC_005261.1 + 137936 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 71234 0.66 0.755363
Target:  5'- aCGCggcccucgGCG-GCGCAGCCgagccccGCGCCgaGCAg -3'
miRNA:   3'- -GUGa-------UGCuCGUGUCGGa------CGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 137972 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 57976 0.66 0.774487
Target:  5'- aCGCagGCGcGCGCGGCC-GCGCC-GCc -3'
miRNA:   3'- -GUGa-UGCuCGUGUCGGaCGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 68525 0.66 0.764985
Target:  5'- -cCUGCcGGCGCcGCCgGCGCCcGCGc -3'
miRNA:   3'- guGAUGcUCGUGuCGGaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 81188 0.66 0.764985
Target:  5'- gUACUcgGGGCACGGCCgcgcggGCGCgaGCc -3'
miRNA:   3'- -GUGAugCUCGUGUCGGa-----CGCGgaCGu -5'
23558 3' -57.9 NC_005261.1 + 62355 0.66 0.793091
Target:  5'- cCACcACGcGCGCcaccAGCUcgcGCGCCUGCGg -3'
miRNA:   3'- -GUGaUGCuCGUG----UCGGa--CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 29921 0.66 0.793091
Target:  5'- gGCUgcGCGAGCugGcggacgcuGCgCUGCGgCCUGCc -3'
miRNA:   3'- gUGA--UGCUCGugU--------CG-GACGC-GGACGu -5'
23558 3' -57.9 NC_005261.1 + 121646 0.66 0.774487
Target:  5'- cCGCcgGCGAGCGCGGgCUguccGCGUCgGCGu -3'
miRNA:   3'- -GUGa-UGCUCGUGUCgGA----CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 37984 0.66 0.774487
Target:  5'- gACUGgGGGCugGCAGaCgUGCGCCcgGCGg -3'
miRNA:   3'- gUGAUgCUCG--UGUC-GgACGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 79311 0.66 0.774487
Target:  5'- gGCgugcGCGGGCGCGcuggugcgcgcGCUggcgcGCGCCUGCGa -3'
miRNA:   3'- gUGa---UGCUCGUGU-----------CGGa----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 39205 0.66 0.764985
Target:  5'- uGCUGUGGGCGCGcGCCgccGCGCCgccGCu -3'
miRNA:   3'- gUGAUGCUCGUGU-CGGa--CGCGGa--CGu -5'
23558 3' -57.9 NC_005261.1 + 50741 0.66 0.755363
Target:  5'- -cCUGCGcgccAGCACGGCCgcgccgaaccUgacgcGCGCCUGCGa -3'
miRNA:   3'- guGAUGC----UCGUGUCGG----------A-----CGCGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.