miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 82865 0.71 0.502131
Target:  5'- gGCgGCGGGC-CAGgCUGgGCCUGCc -3'
miRNA:   3'- gUGaUGCUCGuGUCgGACgCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 106868 0.71 0.502131
Target:  5'- ---gGCGGGCguccGCGGCCUcgcacuccugcaGCGCCUGCGu -3'
miRNA:   3'- gugaUGCUCG----UGUCGGA------------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 120430 0.71 0.502131
Target:  5'- gGCUGgugaacauGCGCGGCgUGCGCCUGCu -3'
miRNA:   3'- gUGAUgcu-----CGUGUCGgACGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 111269 0.7 0.511929
Target:  5'- cCGCUgagaGCGAGCACccGGCCcGCGCCUuccGCc -3'
miRNA:   3'- -GUGA----UGCUCGUG--UCGGaCGCGGA---CGu -5'
23558 3' -57.9 NC_005261.1 + 46148 0.7 0.511929
Target:  5'- aACgcCGAGCGCGGCaCUGCGCCc--- -3'
miRNA:   3'- gUGauGCUCGUGUCG-GACGCGGacgu -5'
23558 3' -57.9 NC_005261.1 + 109369 0.7 0.511929
Target:  5'- cCGCU-CGAGCGCGGCCcagaGgGCCcGCAc -3'
miRNA:   3'- -GUGAuGCUCGUGUCGGa---CgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 73770 0.7 0.511929
Target:  5'- -uCUACGAgGCGCuGGCCUGCGaCgUGCGc -3'
miRNA:   3'- guGAUGCU-CGUG-UCGGACGC-GgACGU- -5'
23558 3' -57.9 NC_005261.1 + 14978 0.7 0.521805
Target:  5'- uCACgggcgAUGGGCGgGGCCcGCGCCUGg- -3'
miRNA:   3'- -GUGa----UGCUCGUgUCGGaCGCGGACgu -5'
23558 3' -57.9 NC_005261.1 + 29005 0.7 0.521805
Target:  5'- gCGCUGC-AGCGCGcggcgugccgcGCCUacgaGCGCCUGCGc -3'
miRNA:   3'- -GUGAUGcUCGUGU-----------CGGA----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 85222 0.7 0.521805
Target:  5'- -cCUugGAGaGCAGCC-GCGCCgGCAu -3'
miRNA:   3'- guGAugCUCgUGUCGGaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 70578 0.7 0.521805
Target:  5'- aGCUcgggcGCGAGCGCAGCggcgUGCGCCcGCc -3'
miRNA:   3'- gUGA-----UGCUCGUGUCGg---ACGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 20138 0.7 0.521805
Target:  5'- gGCUccGCGAGCGCucaGGCC-GCGCCgGCu -3'
miRNA:   3'- gUGA--UGCUCGUG---UCGGaCGCGGaCGu -5'
23558 3' -57.9 NC_005261.1 + 110263 0.7 0.525777
Target:  5'- gGCUGCGGGC-CucccucguGGCCUuuuccuuccuggcggGCGCCUGCGc -3'
miRNA:   3'- gUGAUGCUCGuG--------UCGGA---------------CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 1430 0.7 0.531754
Target:  5'- gGCUACGAGC-CcGCCacUG-GCCUGCAc -3'
miRNA:   3'- gUGAUGCUCGuGuCGG--ACgCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 96439 0.7 0.531754
Target:  5'- aCACU-CGAGUACGGCCUGC-CCgUGaCGg -3'
miRNA:   3'- -GUGAuGCUCGUGUCGGACGcGG-AC-GU- -5'
23558 3' -57.9 NC_005261.1 + 60242 0.7 0.531754
Target:  5'- uGCUGCGgcaGGCACGGCacggGCGCUggggGCAg -3'
miRNA:   3'- gUGAUGC---UCGUGUCGga--CGCGGa---CGU- -5'
23558 3' -57.9 NC_005261.1 + 54539 0.7 0.531754
Target:  5'- gGCUGCG-GCGCcGCCUcggcgGCGCgCUGCGc -3'
miRNA:   3'- gUGAUGCuCGUGuCGGA-----CGCG-GACGU- -5'
23558 3' -57.9 NC_005261.1 + 43369 0.7 0.541772
Target:  5'- cCGCUGCGgcGGCAuCGGCCUcgcgGUGCCgGCAc -3'
miRNA:   3'- -GUGAUGC--UCGU-GUCGGA----CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 79971 0.7 0.55185
Target:  5'- gCGCgGCGAGCGCGGCgCgGCGCg-GCAu -3'
miRNA:   3'- -GUGaUGCUCGUGUCG-GaCGCGgaCGU- -5'
23558 3' -57.9 NC_005261.1 + 121213 0.7 0.55185
Target:  5'- aCGCgACGAGCGCGGCCgcgUGCGacaUGCu -3'
miRNA:   3'- -GUGaUGCUCGUGUCGG---ACGCgg-ACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.