miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 19670 0.66 0.755363
Target:  5'- cCGCgcgcGCGGGCACGGCgUccucgcgcGCGCC-GCAg -3'
miRNA:   3'- -GUGa---UGCUCGUGUCGgA--------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 11819 0.66 0.755363
Target:  5'- gGCgACGGcGCGCgaAGUCUcuugGCGCCUGCAc -3'
miRNA:   3'- gUGaUGCU-CGUG--UCGGA----CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 31439 0.66 0.755363
Target:  5'- gCGCUgguGCGGGCGCAGacgGCGCUgGCGc -3'
miRNA:   3'- -GUGA---UGCUCGUGUCggaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 69702 0.66 0.755363
Target:  5'- gCGC-GCGGGCGcCGGCg-GCGCCgGCAg -3'
miRNA:   3'- -GUGaUGCUCGU-GUCGgaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 88091 0.66 0.755363
Target:  5'- aCGCgACGGccaacGCACAGCUUGUGgaCCUGCu -3'
miRNA:   3'- -GUGaUGCU-----CGUGUCGGACGC--GGACGu -5'
23558 3' -57.9 NC_005261.1 + 104818 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 114657 0.66 0.755363
Target:  5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3'
miRNA:   3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5'
23558 3' -57.9 NC_005261.1 + 10517 0.66 0.754394
Target:  5'- cCGCUGCGGGCcccGCGGCgcgcucgCUgucgcccccggcGCGCCUGCc -3'
miRNA:   3'- -GUGAUGCUCG---UGUCG-------GA------------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 115034 0.66 0.754394
Target:  5'- cCGCUGCGGGCcccGCGGCgcgcucgCUgucgcccccggcGCGCCUGCc -3'
miRNA:   3'- -GUGAUGCUCG---UGUCG-------GA------------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 36346 0.67 0.74563
Target:  5'- ---aGCGcGCGCGGCUggGCGCcCUGCGc -3'
miRNA:   3'- gugaUGCuCGUGUCGGa-CGCG-GACGU- -5'
23558 3' -57.9 NC_005261.1 + 104479 0.67 0.74563
Target:  5'- cCGCgaGCGGGCcCGGCCccgGCGCCgcGCGa -3'
miRNA:   3'- -GUGa-UGCUCGuGUCGGa--CGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 67643 0.67 0.74563
Target:  5'- ---gGCGGGCGCAcGCCgcUGCGCUcGCGc -3'
miRNA:   3'- gugaUGCUCGUGU-CGG--ACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 39798 0.67 0.74563
Target:  5'- ---gGCG-GCGCGGCCgccgGCGCCagGCu -3'
miRNA:   3'- gugaUGCuCGUGUCGGa---CGCGGa-CGu -5'
23558 3' -57.9 NC_005261.1 + 36434 0.67 0.74563
Target:  5'- gACgUACGuGCGCAGCCc-CGCCgagGCGg -3'
miRNA:   3'- gUG-AUGCuCGUGUCGGacGCGGa--CGU- -5'
23558 3' -57.9 NC_005261.1 + 7894 0.67 0.743671
Target:  5'- gCGCgucccCGAGCGCGGCCgggccguccaugGCG-CUGCAg -3'
miRNA:   3'- -GUGau---GCUCGUGUCGGa-----------CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 86326 0.67 0.742689
Target:  5'- cCGCUGCGcgcccgggcgauguAGCGCGccGCCUGCuGCCgcgcgGCGc -3'
miRNA:   3'- -GUGAUGC--------------UCGUGU--CGGACG-CGGa----CGU- -5'
23558 3' -57.9 NC_005261.1 + 84566 0.67 0.73974
Target:  5'- -cCUG-GAGCACGGCCccguagacggccgucUGCGCCaGCGc -3'
miRNA:   3'- guGAUgCUCGUGUCGG---------------ACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 29059 0.67 0.735795
Target:  5'- gCGCUGCuAGCGgagaaccugccCGGCCUggugcugugGCGCCUGCc -3'
miRNA:   3'- -GUGAUGcUCGU-----------GUCGGA---------CGCGGACGu -5'
23558 3' -57.9 NC_005261.1 + 127707 0.67 0.735795
Target:  5'- gACaGCGAGCGC-GCCgcgGgGCCcGCAg -3'
miRNA:   3'- gUGaUGCUCGUGuCGGa--CgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 25538 0.67 0.735795
Target:  5'- uGC-ACGGGCACGGCCUcGaCGCCcaGCc -3'
miRNA:   3'- gUGaUGCUCGUGUCGGA-C-GCGGa-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.