miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23558 3' -57.9 NC_005261.1 + 46500 0.66 0.755363
Target:  5'- cCGCg--GGGCGCAGCCcgGCGUCgcGCAg -3'
miRNA:   3'- -GUGaugCUCGUGUCGGa-CGCGGa-CGU- -5'
23558 3' -57.9 NC_005261.1 + 121646 0.66 0.774487
Target:  5'- cCGCcgGCGAGCGCGGgCUguccGCGUCgGCGu -3'
miRNA:   3'- -GUGa-UGCUCGUGUCgGA----CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 93352 0.66 0.793091
Target:  5'- gCGC-GCGcAGCGCGcGCCagUGCGCCgGCGu -3'
miRNA:   3'- -GUGaUGC-UCGUGU-CGG--ACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 86282 0.66 0.755363
Target:  5'- uCGC-GCGAGCACAGCC--CGCaggGCAc -3'
miRNA:   3'- -GUGaUGCUCGUGUCGGacGCGga-CGU- -5'
23558 3' -57.9 NC_005261.1 + 131187 0.66 0.793091
Target:  5'- gGCUACGcccgcGGCGCGGUCgccgccggcGCGCCcGCGu -3'
miRNA:   3'- gUGAUGC-----UCGUGUCGGa--------CGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 120629 0.68 0.685433
Target:  5'- -cCUGCuGGUgGCGGcCCUGUGCCUGCGg -3'
miRNA:   3'- guGAUGcUCG-UGUC-GGACGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 62355 0.66 0.793091
Target:  5'- cCACcACGcGCGCcaccAGCUcgcGCGCCUGCGg -3'
miRNA:   3'- -GUGaUGCuCGUG----UCGGa--CGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 120390 0.67 0.695632
Target:  5'- uCGCgcacCGAGCAgAGCg-GCGUCUGCGc -3'
miRNA:   3'- -GUGau--GCUCGUgUCGgaCGCGGACGU- -5'
23558 3' -57.9 NC_005261.1 + 21727 0.67 0.71586
Target:  5'- uGCUuCGAGCcgaucgacacGCGGCugCUGCGCCUGgAg -3'
miRNA:   3'- gUGAuGCUCG----------UGUCG--GACGCGGACgU- -5'
23558 3' -57.9 NC_005261.1 + 106761 0.67 0.732826
Target:  5'- cCGCcACGAGCuugccgGCGGCCagcccagcgccgucUGCGCCcGCAc -3'
miRNA:   3'- -GUGaUGCUCG------UGUCGG--------------ACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 23189 0.67 0.735795
Target:  5'- gACaGCGAGCGC-GCCgcgGgGCCcGCAg -3'
miRNA:   3'- gUGaUGCUCGUGuCGGa--CgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 84566 0.67 0.73974
Target:  5'- -cCUG-GAGCACGGCCccguagacggccgucUGCGCCaGCGc -3'
miRNA:   3'- guGAUgCUCGUGUCGG---------------ACGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 20560 0.66 0.755363
Target:  5'- gGCgGCGGGCugcGCAGCg-GCGCCgGCGg -3'
miRNA:   3'- gUGaUGCUCG---UGUCGgaCGCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 289 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 137936 0.66 0.755363
Target:  5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3'
miRNA:   3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5'
23558 3' -57.9 NC_005261.1 + 31653 0.66 0.774487
Target:  5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3'
miRNA:   3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5'
23558 3' -57.9 NC_005261.1 + 96738 0.66 0.774487
Target:  5'- gCGCggcGCGAGUccCGGCCUGgGCC-GCGg -3'
miRNA:   3'- -GUGa--UGCUCGu-GUCGGACgCGGaCGU- -5'
23558 3' -57.9 NC_005261.1 + 80490 0.66 0.783859
Target:  5'- cCACUuggucaGCGAGCACAcguuCUUGCGCUUGg- -3'
miRNA:   3'- -GUGA------UGCUCGUGUc---GGACGCGGACgu -5'
23558 3' -57.9 NC_005261.1 + 115185 0.66 0.783859
Target:  5'- gCAC-GCGcuucAGCACGGCCcaGCGCCcgUGCGu -3'
miRNA:   3'- -GUGaUGC----UCGUGUCGGa-CGCGG--ACGU- -5'
23558 3' -57.9 NC_005261.1 + 100630 0.66 0.793091
Target:  5'- cCGCUcgcACaGGcGCGCGGCCcGCGCC-GCAa -3'
miRNA:   3'- -GUGA---UG-CU-CGUGUCGGaCGCGGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.