Results 21 - 40 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23558 | 3' | -57.9 | NC_005261.1 | + | 31653 | 0.66 | 0.774487 |
Target: 5'- gCGCgguCGAGUACcucuGCCUGCGgCUGg- -3' miRNA: 3'- -GUGau-GCUCGUGu---CGGACGCgGACgu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 96738 | 0.66 | 0.774487 |
Target: 5'- gCGCggcGCGAGUccCGGCCUGgGCC-GCGg -3' miRNA: 3'- -GUGa--UGCUCGu-GUCGGACgCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 104584 | 0.66 | 0.783859 |
Target: 5'- gGCUGCGcGCGCAucGCCUcCGCCaGCc -3' miRNA: 3'- gUGAUGCuCGUGU--CGGAcGCGGaCGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 88039 | 0.66 | 0.793091 |
Target: 5'- -cCUGgGGGCGgucCAGUCacGCGCCUGCGc -3' miRNA: 3'- guGAUgCUCGU---GUCGGa-CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 30180 | 0.66 | 0.755363 |
Target: 5'- gCGCUGCGcGCcgagGCGGCCgccGCGCUggagGCGg -3' miRNA: 3'- -GUGAUGCuCG----UGUCGGa--CGCGGa---CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 71234 | 0.66 | 0.755363 |
Target: 5'- aCGCggcccucgGCG-GCGCAGCCgagccccGCGCCgaGCAg -3' miRNA: 3'- -GUGa-------UGCuCGUGUCGGa------CGCGGa-CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 121646 | 0.66 | 0.774487 |
Target: 5'- cCGCcgGCGAGCGCGGgCUguccGCGUCgGCGu -3' miRNA: 3'- -GUGa-UGCUCGUGUCgGA----CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 93352 | 0.66 | 0.793091 |
Target: 5'- gCGC-GCGcAGCGCGcGCCagUGCGCCgGCGu -3' miRNA: 3'- -GUGaUGC-UCGUGU-CGG--ACGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 137936 | 0.66 | 0.755363 |
Target: 5'- gGCUGCG-GCgGCGGCUgcggcgGCGgCUGCGg -3' miRNA: 3'- gUGAUGCuCG-UGUCGGa-----CGCgGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 131187 | 0.66 | 0.793091 |
Target: 5'- gGCUACGcccgcGGCGCGGUCgccgccggcGCGCCcGCGu -3' miRNA: 3'- gUGAUGC-----UCGUGUCGGa--------CGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 62880 | 0.66 | 0.774487 |
Target: 5'- --aUGCGcGGCGCAGCCcGCGCgagGCGg -3' miRNA: 3'- gugAUGC-UCGUGUCGGaCGCGga-CGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 68525 | 0.66 | 0.764985 |
Target: 5'- -cCUGCcGGCGCcGCCgGCGCCcGCGc -3' miRNA: 3'- guGAUGcUCGUGuCGGaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 80490 | 0.66 | 0.783859 |
Target: 5'- cCACUuggucaGCGAGCACAcguuCUUGCGCUUGg- -3' miRNA: 3'- -GUGA------UGCUCGUGUc---GGACGCGGACgu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 115185 | 0.66 | 0.783859 |
Target: 5'- gCAC-GCGcuucAGCACGGCCcaGCGCCcgUGCGu -3' miRNA: 3'- -GUGaUGC----UCGUGUCGGa-CGCGG--ACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 100630 | 0.66 | 0.793091 |
Target: 5'- cCGCUcgcACaGGcGCGCGGCCcGCGCC-GCAa -3' miRNA: 3'- -GUGA---UG-CU-CGUGUCGGaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 62355 | 0.66 | 0.793091 |
Target: 5'- cCACcACGcGCGCcaccAGCUcgcGCGCCUGCGg -3' miRNA: 3'- -GUGaUGCuCGUG----UCGGa--CGCGGACGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 84566 | 0.67 | 0.73974 |
Target: 5'- -cCUG-GAGCACGGCCccguagacggccgucUGCGCCaGCGc -3' miRNA: 3'- guGAUgCUCGUGUCGG---------------ACGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 20560 | 0.66 | 0.755363 |
Target: 5'- gGCgGCGGGCugcGCAGCg-GCGCCgGCGg -3' miRNA: 3'- gUGaUGCUCG---UGUCGgaCGCGGaCGU- -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 122665 | 0.66 | 0.755363 |
Target: 5'- gCGCgaaGAGCAucacguucguCAG-CUGCGCCUGCu -3' miRNA: 3'- -GUGaugCUCGU----------GUCgGACGCGGACGu -5' |
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23558 | 3' | -57.9 | NC_005261.1 | + | 10139 | 0.66 | 0.755363 |
Target: 5'- cCGCcAUGAGcCACGGCCaGC-CCUGCc -3' miRNA: 3'- -GUGaUGCUC-GUGUCGGaCGcGGACGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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