miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 204 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 137887 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 20192 0.66 0.546749
Target:  5'- aGCaGGCGaagcggGGCCGCCaaaGGCCCCGc -3'
miRNA:   3'- gUGcCUGCa-----CCGGCGGgacCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 31062 0.66 0.565715
Target:  5'- gGCGGGagcCGccGCUGCCCgcccgcgugcUGGGCCCCa -3'
miRNA:   3'- gUGCCU---GCacCGGCGGG----------ACCUGGGGc -5'
23559 5' -64.2 NC_005261.1 + 68242 0.66 0.507641
Target:  5'- gCGgGGGCGUguucguggacugccuGGCgCGCCUgcgcccgcgcggcgGGGCCCCGg -3'
miRNA:   3'- -GUgCCUGCA---------------CCG-GCGGGa-------------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 105123 0.66 0.518702
Target:  5'- gCGCGGGCGcgGGCCGCCggcgcgcgcaGGuCCUCGc -3'
miRNA:   3'- -GUGCCUGCa-CCGGCGGga--------CCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 51913 0.66 0.537342
Target:  5'- -cCGGGCGcgcagcGGCCGCggCCUGG-UCCCGc -3'
miRNA:   3'- guGCCUGCa-----CCGGCG--GGACCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 58992 0.66 0.565715
Target:  5'- cCACGGGCGgcggugcgccgGGCuCGCCCaGcGGCgCCGc -3'
miRNA:   3'- -GUGCCUGCa----------CCG-GCGGGaC-CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 68068 0.66 0.527991
Target:  5'- gCACGGugGUcucGGUCGCCCgcggGGGCggggaggCCGu -3'
miRNA:   3'- -GUGCCugCA---CCGGCGGGa---CCUGg------GGC- -5'
23559 5' -64.2 NC_005261.1 + 97642 0.66 0.565715
Target:  5'- aGCGGGCGcggGuGCCGCaCCUGGGgggCCGg -3'
miRNA:   3'- gUGCCUGCa--C-CGGCG-GGACCUgg-GGC- -5'
23559 5' -64.2 NC_005261.1 + 45941 0.66 0.537342
Target:  5'- cCGCGcGCGagGGCCGCCa-GGGCgCCGu -3'
miRNA:   3'- -GUGCcUGCa-CCGGCGGgaCCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 44713 0.66 0.536405
Target:  5'- uCACGGcugacgcGCGcaggGcGCUGCagCUGGGCCCCGa -3'
miRNA:   3'- -GUGCC-------UGCa---C-CGGCGg-GACCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 61421 0.66 0.545806
Target:  5'- uCGCaGGACcUGGCCucgcugaccaugcGCCUgcagacGGACCCCGu -3'
miRNA:   3'- -GUG-CCUGcACCGG-------------CGGGa-----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 98566 0.66 0.546749
Target:  5'- gGCGGGC--GGCCGUCCUccgcGGGCUCgGg -3'
miRNA:   3'- gUGCCUGcaCCGGCGGGA----CCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 118953 0.66 0.556209
Target:  5'- cCGCGGcgcACGUGGCCaagGUCCUGcACgCCGc -3'
miRNA:   3'- -GUGCC---UGCACCGG---CGGGACcUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 2613 0.66 0.565715
Target:  5'- gGCGG-CGgGGCCGCCgggcggcaUGGGgCCCa -3'
miRNA:   3'- gUGCCuGCaCCGGCGGg-------ACCUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 43277 0.67 0.500322
Target:  5'- --gGGGCGUcgcGGCCGCCUUucccgcgggGGGCgCCGg -3'
miRNA:   3'- gugCCUGCA---CCGGCGGGA---------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 28849 0.66 0.506723
Target:  5'- gGCGGccguCGUGGCCgccGCCCUugaggcugcggcgcGGACgCCGc -3'
miRNA:   3'- gUGCCu---GCACCGG---CGGGA--------------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 109286 0.66 0.513159
Target:  5'- -cCGGACGcgagGaggaacuuagagauaGCCGCCCUGGcCUCCGc -3'
miRNA:   3'- guGCCUGCa---C---------------CGGCGGGACCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 59797 0.66 0.518702
Target:  5'- gGCGGGCGgcaGGCCGgCgUGGcGCCgCGu -3'
miRNA:   3'- gUGCCUGCa--CCGGCgGgACC-UGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.