miRNA display CGI


Results 41 - 60 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23559 5' -64.2 NC_005261.1 + 42359 0.66 0.509477
Target:  5'- gGCGGGC-UGGCCGCgcaaacguaCUGGugCCgGc -3'
miRNA:   3'- gUGCCUGcACCGGCGg--------GACCugGGgC- -5'
23559 5' -64.2 NC_005261.1 + 51913 0.66 0.537342
Target:  5'- -cCGGGCGcgcagcGGCCGCggCCUGG-UCCCGc -3'
miRNA:   3'- guGCCUGCa-----CCGGCG--GGACCuGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 58992 0.66 0.565715
Target:  5'- cCACGGGCGgcggugcgccgGGCuCGCCCaGcGGCgCCGc -3'
miRNA:   3'- -GUGCCUGCa----------CCG-GCGGGaC-CUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 66043 0.66 0.509477
Target:  5'- gGCGGcCacGGCCaGCCCcGGGCCCgCGg -3'
miRNA:   3'- gUGCCuGcaCCGG-CGGGaCCUGGG-GC- -5'
23559 5' -64.2 NC_005261.1 + 97642 0.66 0.565715
Target:  5'- aGCGGGCGcggGuGCCGCaCCUGGGgggCCGg -3'
miRNA:   3'- gUGCCUGCa--C-CGGCG-GGACCUgg-GGC- -5'
23559 5' -64.2 NC_005261.1 + 63368 0.67 0.464473
Target:  5'- gCGCGGuGCGggugugccgGGUCGCCCUGG-CCgUGg -3'
miRNA:   3'- -GUGCC-UGCa--------CCGGCGGGACCuGGgGC- -5'
23559 5' -64.2 NC_005261.1 + 2613 0.66 0.565715
Target:  5'- gGCGG-CGgGGCCGCCgggcggcaUGGGgCCCa -3'
miRNA:   3'- gUGCCuGCaCCGGCGGg-------ACCUgGGGc -5'
23559 5' -64.2 NC_005261.1 + 21203 0.67 0.473313
Target:  5'- cCGCGGACGcUGGCCccgGCCgCgacggcGGGCCCg- -3'
miRNA:   3'- -GUGCCUGC-ACCGG---CGG-Ga-----CCUGGGgc -5'
23559 5' -64.2 NC_005261.1 + 60401 0.67 0.473313
Target:  5'- cCAUGG-CGccgGGCCgGCCC-GGGCCCgGg -3'
miRNA:   3'- -GUGCCuGCa--CCGG-CGGGaCCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 22747 0.67 0.485829
Target:  5'- gCGCgGGGCGgcGGCgGCCCacgcgucugggggcGGGCCCCGc -3'
miRNA:   3'- -GUG-CCUGCa-CCGgCGGGa-------------CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 128709 0.67 0.491241
Target:  5'- -uCGGGa--GGCgCGCCC-GGGCCCCGc -3'
miRNA:   3'- guGCCUgcaCCG-GCGGGaCCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 43277 0.67 0.500322
Target:  5'- --gGGGCGUcgcGGCCGCCUUucccgcgggGGGCgCCGg -3'
miRNA:   3'- gugCCUGCA---CCGGCGGGA---------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 28849 0.66 0.506723
Target:  5'- gGCGGccguCGUGGCCgccGCCCUugaggcugcggcgcGGACgCCGc -3'
miRNA:   3'- gUGCCu---GCACCGG---CGGGA--------------CCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 113044 0.66 0.518702
Target:  5'- gCGCGcGGCGUGGCgCGCCaccgcucgCUGGGCaUCGg -3'
miRNA:   3'- -GUGC-CUGCACCG-GCGG--------GACCUGgGGC- -5'
23559 5' -64.2 NC_005261.1 + 68068 0.66 0.527991
Target:  5'- gCACGGugGUcucGGUCGCCCgcggGGGCggggaggCCGu -3'
miRNA:   3'- -GUGCCugCA---CCGGCGGGa---CCUGg------GGC- -5'
23559 5' -64.2 NC_005261.1 + 204 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 137887 0.66 0.537342
Target:  5'- aGCGGugcCGccGCCGcCCCUGGugCUCGc -3'
miRNA:   3'- gUGCCu--GCacCGGC-GGGACCugGGGC- -5'
23559 5' -64.2 NC_005261.1 + 61421 0.66 0.545806
Target:  5'- uCGCaGGACcUGGCCucgcugaccaugcGCCUgcagacGGACCCCGu -3'
miRNA:   3'- -GUG-CCUGcACCGG-------------CGGGa-----CCUGGGGC- -5'
23559 5' -64.2 NC_005261.1 + 98566 0.66 0.546749
Target:  5'- gGCGGGC--GGCCGUCCUccgcGGGCUCgGg -3'
miRNA:   3'- gUGCCUGcaCCGGCGGGA----CCUGGGgC- -5'
23559 5' -64.2 NC_005261.1 + 118953 0.66 0.556209
Target:  5'- cCGCGGcgcACGUGGCCaagGUCCUGcACgCCGc -3'
miRNA:   3'- -GUGCC---UGCACCGG---CGGGACcUGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.