Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23560 | 3' | -53.3 | NC_005261.1 | + | 97673 | 0.66 | 0.972815 |
Target: 5'- gCGUCCgcGGGGCUugGgCGGGgcugcCGGGGCGg -3' miRNA: 3'- -GCAGG--CCUCGAugUaGCUC-----GUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 125034 | 0.66 | 0.972815 |
Target: 5'- -cUCCGGuggGGCgcugAC-UCGGGCAGGGCc -3' miRNA: 3'- gcAGGCC---UCGa---UGuAGCUCGUCUUGc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 125111 | 0.66 | 0.969938 |
Target: 5'- -uUCCGGGGC-GCGcUCGGGUGGuGCGu -3' miRNA: 3'- gcAGGCCUCGaUGU-AGCUCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 86645 | 0.66 | 0.969938 |
Target: 5'- gCGUCaggaGGAGCacgGCggCGAGgCAGAagACGg -3' miRNA: 3'- -GCAGg---CCUCGa--UGuaGCUC-GUCU--UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 127808 | 0.66 | 0.968728 |
Target: 5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3' miRNA: 3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 23291 | 0.66 | 0.968728 |
Target: 5'- gCGUCCGuGGGC-ACAgcacccguauggcCGAGCAGAAa- -3' miRNA: 3'- -GCAGGC-CUCGaUGUa------------GCUCGUCUUgc -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 57903 | 0.66 | 0.966849 |
Target: 5'- aGgCCGGGGCcGCgGUCGAGCGcgucuaccguGAGCGc -3' miRNA: 3'- gCaGGCCUCGaUG-UAGCUCGU----------CUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 102597 | 0.66 | 0.966849 |
Target: 5'- uGgggCUGGGGCUGgGgcUUGGGCAGaAACGg -3' miRNA: 3'- gCa--GGCCUCGAUgU--AGCUCGUC-UUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 100460 | 0.66 | 0.963543 |
Target: 5'- aGUCCguuGGGGCgccgGCGcUUGGGCGGcGCGg -3' miRNA: 3'- gCAGG---CCUCGa---UGU-AGCUCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 47882 | 0.66 | 0.963543 |
Target: 5'- gCGUCCGGGGagcgGCggCG-GCGGcGCGa -3' miRNA: 3'- -GCAGGCCUCga--UGuaGCuCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 97241 | 0.66 | 0.963543 |
Target: 5'- gGcCCGGccGGCUGgGUCGcggggucggguGGCGGGACGu -3' miRNA: 3'- gCaGGCC--UCGAUgUAGC-----------UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 7530 | 0.66 | 0.956255 |
Target: 5'- aCGUCCucggcGAGgUGC-UCGAGCAGcACGc -3' miRNA: 3'- -GCAGGc----CUCgAUGuAGCUCGUCuUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 47744 | 0.66 | 0.956255 |
Target: 5'- aGUCgCGGAGCaGCAcgcUGAGCAGGcucucGCGc -3' miRNA: 3'- gCAG-GCCUCGaUGUa--GCUCGUCU-----UGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 116371 | 0.67 | 0.952263 |
Target: 5'- gCGUUCGcGAGCgcgaGCGUCagcuGCGGGGCGa -3' miRNA: 3'- -GCAGGC-CUCGa---UGUAGcu--CGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 75300 | 0.67 | 0.952263 |
Target: 5'- gGUgCGGGGCUGCcugccggUGGGCuAGGGCGc -3' miRNA: 3'- gCAgGCCUCGAUGua-----GCUCG-UCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 27710 | 0.67 | 0.952263 |
Target: 5'- uCG-CCGGAGCccucGCcgCGGGaGGAGCGg -3' miRNA: 3'- -GCaGGCCUCGa---UGuaGCUCgUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 24382 | 0.67 | 0.952263 |
Target: 5'- --cCCGGugGGCU-CGUCGgcGGCGGGGCGg -3' miRNA: 3'- gcaGGCC--UCGAuGUAGC--UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 132227 | 0.67 | 0.952263 |
Target: 5'- uCG-CCGGAGCccucGCcgCGGGaGGAGCGg -3' miRNA: 3'- -GCaGGCCUCGa---UGuaGCUCgUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 128899 | 0.67 | 0.952263 |
Target: 5'- --cCCGGugGGCU-CGUCGgcGGCGGGGCGg -3' miRNA: 3'- gcaGGCC--UCGAuGUAGC--UCGUCUUGC- -5' |
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23560 | 3' | -53.3 | NC_005261.1 | + | 128499 | 0.67 | 0.952263 |
Target: 5'- -uUCCGGgcgGGCUA-GUCGcGGCGGAGCGc -3' miRNA: 3'- gcAGGCC---UCGAUgUAGC-UCGUCUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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