miRNA display CGI


Results 41 - 60 of 791 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23561 3' -62.9 NC_005261.1 + 5864 0.68 0.448828
Target:  5'- gCCGCGagcgcGGCgAGCGCGccgcGGCGgaAGCUGc -3'
miRNA:   3'- -GGCGU-----CCGgUCGCGCa---CCGCg-UCGAC- -5'
23561 3' -62.9 NC_005261.1 + 6422 0.69 0.397627
Target:  5'- gCgGCGGcgcGCCgucaGGCGCGgcgGGCGCGGCg- -3'
miRNA:   3'- -GgCGUC---CGG----UCGCGCa--CCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 6478 0.69 0.389464
Target:  5'- gCCGCGccGGCCGGCGUGccguccGcGUGCAGCa- -3'
miRNA:   3'- -GGCGU--CCGGUCGCGCa-----C-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 6787 0.69 0.381412
Target:  5'- cCCGCgAGGCgCGGCGCaaggggGGCGcCGGCg- -3'
miRNA:   3'- -GGCG-UCCG-GUCGCGca----CCGC-GUCGac -5'
23561 3' -62.9 NC_005261.1 + 7211 0.7 0.342107
Target:  5'- gCGCucGGCCuggaacacguagaAGCGCGUGGC-CAGCa- -3'
miRNA:   3'- gGCGu-CCGG-------------UCGCGCACCGcGUCGac -5'
23561 3' -62.9 NC_005261.1 + 7446 0.84 0.036566
Target:  5'- uCCGCGgugcGGCCAGCGCGgGGCGcCAGCUGc -3'
miRNA:   3'- -GGCGU----CCGGUCGCGCaCCGC-GUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 7629 0.69 0.395986
Target:  5'- gCGCAGGCaaagacgggccaGGCGCGgggccGCGCGGCg- -3'
miRNA:   3'- gGCGUCCGg-----------UCGCGCac---CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 8918 0.73 0.227899
Target:  5'- aCGCGGcGCCAGCGCa-GGCGCGGg-- -3'
miRNA:   3'- gGCGUC-CGGUCGCGcaCCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 8944 0.67 0.484912
Target:  5'- gCCGgGGGCgGGCGgGgcGGCGCGGg-- -3'
miRNA:   3'- -GGCgUCCGgUCGCgCa-CCGCGUCgac -5'
23561 3' -62.9 NC_005261.1 + 9439 0.69 0.389464
Target:  5'- gCCGCGGGCCcgGGCGCccagacaacgGcGCGCAGUUu -3'
miRNA:   3'- -GGCGUCCGG--UCGCGca--------C-CGCGUCGAc -5'
23561 3' -62.9 NC_005261.1 + 9511 0.66 0.580335
Target:  5'- aCgGCGGGCgGGCGgGgcccgGGCGCgccucccgAGCUc -3'
miRNA:   3'- -GgCGUCCGgUCGCgCa----CCGCG--------UCGAc -5'
23561 3' -62.9 NC_005261.1 + 10011 0.68 0.414278
Target:  5'- -gGCGGGCCcaauaagaaagcGGUGCGggGGCGgGGUUGa -3'
miRNA:   3'- ggCGUCCGG------------UCGCGCa-CCGCgUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 10478 0.66 0.55013
Target:  5'- -aGCAGGCCGGCcCGcugcaccggcuuuUGcGCGCGGCc- -3'
miRNA:   3'- ggCGUCCGGUCGcGC-------------AC-CGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 10519 0.66 0.532811
Target:  5'- gCUGCGGGCCccgcGGCGCGcucgcugucgcccccGGCGCGcCUGc -3'
miRNA:   3'- -GGCGUCCGG----UCGCGCa--------------CCGCGUcGAC- -5'
23561 3' -62.9 NC_005261.1 + 11127 0.67 0.497867
Target:  5'- aUCGCGGGUCAccGCGCccagccgucauugcgGcGGCGCGGCg- -3'
miRNA:   3'- -GGCGUCCGGU--CGCG---------------CaCCGCGUCGac -5'
23561 3' -62.9 NC_005261.1 + 11220 0.66 0.580335
Target:  5'- gCCGCGuGGCCcccCGCG-GGCGC-GCUu -3'
miRNA:   3'- -GGCGU-CCGGuc-GCGCaCCGCGuCGAc -5'
23561 3' -62.9 NC_005261.1 + 11465 0.68 0.414278
Target:  5'- -aGCGGaGCgGGCGCGgaggGGCGgGGCg- -3'
miRNA:   3'- ggCGUC-CGgUCGCGCa---CCGCgUCGac -5'
23561 3' -62.9 NC_005261.1 + 11697 0.72 0.274415
Target:  5'- gCGCGuGGCCgaGGCGCGgcgGGCGCgGGCg- -3'
miRNA:   3'- gGCGU-CCGG--UCGCGCa--CCGCG-UCGac -5'
23561 3' -62.9 NC_005261.1 + 11770 0.9 0.014418
Target:  5'- aCCGCgAGGCgAGCGCGcUGGCGCGGCUGg -3'
miRNA:   3'- -GGCG-UCCGgUCGCGC-ACCGCGUCGAC- -5'
23561 3' -62.9 NC_005261.1 + 11843 0.68 0.414278
Target:  5'- cCCGCGGGCgCgcguucgcgAGCGCGa-GCGuCAGCUGc -3'
miRNA:   3'- -GGCGUCCG-G---------UCGCGCacCGC-GUCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.