miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 102683 0.66 0.902488
Target:  5'- --cGCCGcGUCcgcCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGuauGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 68616 0.66 0.902488
Target:  5'- --cGCCGUGCCGggcggcgggcGCGCGGUCGa--- -3'
miRNA:   3'- uaaCGGUACGGUa---------UGUGCCGGCagaa -5'
23562 3' -54.8 NC_005261.1 + 77233 0.66 0.902488
Target:  5'- -aUGCCGgaGCCGgagGCGCGGgCGUUg- -3'
miRNA:   3'- uaACGGUa-CGGUa--UGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 118138 0.66 0.902488
Target:  5'- --cGCUcgGCCGgcucgcgcagACGCuGGCCGUCg- -3'
miRNA:   3'- uaaCGGuaCGGUa---------UGUG-CCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 45278 0.66 0.902488
Target:  5'- --cGCCGugcUGCCGUAC-CGGCUGgcCUUg -3'
miRNA:   3'- uaaCGGU---ACGGUAUGuGCCGGCa-GAA- -5'
23562 3' -54.8 NC_005261.1 + 17006 0.66 0.902488
Target:  5'- --cGCCAgcaUGUCGcACGCGGCCGcgCUc -3'
miRNA:   3'- uaaCGGU---ACGGUaUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 81307 0.66 0.895782
Target:  5'- --cGuCCGUGCCGUuguCGgGGUCGUCg- -3'
miRNA:   3'- uaaC-GGUACGGUAu--GUgCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 12520 0.66 0.888826
Target:  5'- --aGCCGaGCCcgcgGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGuaugUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 81797 0.66 0.888826
Target:  5'- uAUUGCCAagcgaGCCGcUGCGCGGCgGUg-- -3'
miRNA:   3'- -UAACGGUa----CGGU-AUGUGCCGgCAgaa -5'
23562 3' -54.8 NC_005261.1 + 3474 0.66 0.881624
Target:  5'- --cGCCAUGCCGccgcggguCGCGgguGCCGUCg- -3'
miRNA:   3'- uaaCGGUACGGUau------GUGC---CGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 50511 0.66 0.881624
Target:  5'- --cGCCcaGCCAgcgcaGCAgGGCCGUCg- -3'
miRNA:   3'- uaaCGGuaCGGUa----UGUgCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 48795 0.66 0.881624
Target:  5'- --cGCCGgcuccgugagGCCGUGCGCGG-CGUCc- -3'
miRNA:   3'- uaaCGGUa---------CGGUAUGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 31684 0.66 0.874183
Target:  5'- --cGCCG-GCCcggACGCGGCCGcCg- -3'
miRNA:   3'- uaaCGGUaCGGua-UGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 67530 0.66 0.874183
Target:  5'- --gGCCGUGCCc-GCGCGGgCCGcgCUg -3'
miRNA:   3'- uaaCGGUACGGuaUGUGCC-GGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 52424 0.66 0.874183
Target:  5'- --cGCUGgacCCGUACucgACGGCCGUCUg -3'
miRNA:   3'- uaaCGGUac-GGUAUG---UGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 98765 0.66 0.874183
Target:  5'- gGUUGCCGcUGCCGccGC-CGGCCGcCg- -3'
miRNA:   3'- -UAACGGU-ACGGUa-UGuGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 60804 0.66 0.866506
Target:  5'- --cGaCCAgcugGUUGUACugGGCCGUCg- -3'
miRNA:   3'- uaaC-GGUa---CGGUAUGugCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 67458 0.67 0.8586
Target:  5'- --cGCCuucucGCCGUGCAUGGCC-UCa- -3'
miRNA:   3'- uaaCGGua---CGGUAUGUGCCGGcAGaa -5'
23562 3' -54.8 NC_005261.1 + 107945 0.67 0.8586
Target:  5'- --cGCCAcguaGuCCGUGCGCGGCCG-Cg- -3'
miRNA:   3'- uaaCGGUa---C-GGUAUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 20179 0.67 0.8586
Target:  5'- -cUGCCGcgGCCGccaGCGCGGgCGUCg- -3'
miRNA:   3'- uaACGGUa-CGGUa--UGUGCCgGCAGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.