miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 89401 0.67 0.8586
Target:  5'- -cUGCCGccgGCCuuccucggcgcGUGCGCGGCCGcCg- -3'
miRNA:   3'- uaACGGUa--CGG-----------UAUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 20179 0.67 0.8586
Target:  5'- -cUGCCGcgGCCGccaGCGCGGgCGUCg- -3'
miRNA:   3'- uaACGGUa-CGGUa--UGUGCCgGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 132834 0.67 0.850472
Target:  5'- --cGCUuucGUCG-ACGCGGCCGUCUa -3'
miRNA:   3'- uaaCGGua-CGGUaUGUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 64123 0.67 0.850472
Target:  5'- --gGCaCGUGCC--GCGCGGCCGcCa- -3'
miRNA:   3'- uaaCG-GUACGGuaUGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 32221 0.67 0.847991
Target:  5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3'
miRNA:   3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 29814 0.67 0.847991
Target:  5'- gGUUGCCGUGCacgcaggcgcggugGCGCGGCUG-CUg -3'
miRNA:   3'- -UAACGGUACGgua-----------UGUGCCGGCaGAa -5'
23562 3' -54.8 NC_005261.1 + 136738 0.67 0.847991
Target:  5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3'
miRNA:   3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5'
23562 3' -54.8 NC_005261.1 + 125693 0.67 0.842128
Target:  5'- uUUGCCGggcuugGCCcgGCgACGGCCGcCg- -3'
miRNA:   3'- uAACGGUa-----CGGuaUG-UGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 119127 0.67 0.842128
Target:  5'- --gGCCGcgGCCGcgGCGCGGCCaUCUc -3'
miRNA:   3'- uaaCGGUa-CGGUa-UGUGCCGGcAGAa -5'
23562 3' -54.8 NC_005261.1 + 58483 0.67 0.842128
Target:  5'- --aGCCGcagGCCGgcGCGCGGCCG-CUUu -3'
miRNA:   3'- uaaCGGUa--CGGUa-UGUGCCGGCaGAA- -5'
23562 3' -54.8 NC_005261.1 + 126542 0.67 0.842128
Target:  5'- --cGCCucgGCCAcGCGCcGCCGUCg- -3'
miRNA:   3'- uaaCGGua-CGGUaUGUGcCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 8823 0.67 0.842128
Target:  5'- --cGCUuuauUGCgCGU-CGCGGCCGUCUc -3'
miRNA:   3'- uaaCGGu---ACG-GUAuGUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 32886 0.67 0.842128
Target:  5'- --gGCC-UGCCu--CACGGCCGUg-- -3'
miRNA:   3'- uaaCGGuACGGuauGUGCCGGCAgaa -5'
23562 3' -54.8 NC_005261.1 + 135223 0.67 0.833578
Target:  5'- --gGCCAcgGCCGaGCGCGucgccGCCGUCUUu -3'
miRNA:   3'- uaaCGGUa-CGGUaUGUGC-----CGGCAGAA- -5'
23562 3' -54.8 NC_005261.1 + 20563 0.67 0.833578
Target:  5'- --gGCCcgGCCGgGCGCGGCgGggcgCUUa -3'
miRNA:   3'- uaaCGGuaCGGUaUGUGCCGgCa---GAA- -5'
23562 3' -54.8 NC_005261.1 + 91950 0.67 0.830102
Target:  5'- cGUUGCCcgGCCAgagcgccccggggACACGGUCG-Cg- -3'
miRNA:   3'- -UAACGGuaCGGUa------------UGUGCCGGCaGaa -5'
23562 3' -54.8 NC_005261.1 + 84680 0.67 0.824829
Target:  5'- --cGCCuggGCCGcgGCGCGGCCGa--- -3'
miRNA:   3'- uaaCGGua-CGGUa-UGUGCCGGCagaa -5'
23562 3' -54.8 NC_005261.1 + 37903 0.68 0.81589
Target:  5'- --gGCCAUGCCcUACGCGcGCCa---- -3'
miRNA:   3'- uaaCGGUACGGuAUGUGC-CGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 15334 0.68 0.81589
Target:  5'- --aGCCGUGCaCAaACGCGGCCa---- -3'
miRNA:   3'- uaaCGGUACG-GUaUGUGCCGGcagaa -5'
23562 3' -54.8 NC_005261.1 + 109126 0.68 0.81589
Target:  5'- --gGCgGUGUCGUGCGCGGCCc---- -3'
miRNA:   3'- uaaCGgUACGGUAUGUGCCGGcagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.