miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 3' -54.8 NC_005261.1 + 39898 0.68 0.80677
Target:  5'- --gGCUGUGCagcuggcgcGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUACGgua------UGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 51803 0.68 0.80677
Target:  5'- --gGCCAUGCuCGUGCuGCGGCUGgugCg- -3'
miRNA:   3'- uaaCGGUACG-GUAUG-UGCCGGCa--Gaa -5'
23562 3' -54.8 NC_005261.1 + 85790 0.68 0.80677
Target:  5'- --cGCCGUcGCUggGCagACGGCCGUCg- -3'
miRNA:   3'- uaaCGGUA-CGGuaUG--UGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 25195 0.68 0.80677
Target:  5'- --cGCCAcGCCGcGCGCGGcCCGcUCUg -3'
miRNA:   3'- uaaCGGUaCGGUaUGUGCC-GGC-AGAa -5'
23562 3' -54.8 NC_005261.1 + 106501 0.68 0.778416
Target:  5'- --gGCCggGCCAUcGCGCGGCCaGUUc- -3'
miRNA:   3'- uaaCGGuaCGGUA-UGUGCCGG-CAGaa -5'
23562 3' -54.8 NC_005261.1 + 84576 0.68 0.778416
Target:  5'- --gGCC---CCGUAgACGGCCGUCUg -3'
miRNA:   3'- uaaCGGuacGGUAUgUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 28277 0.69 0.738669
Target:  5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3'
miRNA:   3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 29342 0.69 0.738669
Target:  5'- --cGCCGgcggGCa--GCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGUa---CGguaUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 132794 0.69 0.738669
Target:  5'- uGUUGCCGccGCCGcggcCGCGGUCGUCUc -3'
miRNA:   3'- -UAACGGUa-CGGUau--GUGCCGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 43582 0.69 0.728454
Target:  5'- --cGCUucGCCGUGCGCGacGCCGUCUc -3'
miRNA:   3'- uaaCGGuaCGGUAUGUGC--CGGCAGAa -5'
23562 3' -54.8 NC_005261.1 + 110503 0.69 0.718149
Target:  5'- --aGCUG-GCCAgcguCACGGCCGUCg- -3'
miRNA:   3'- uaaCGGUaCGGUau--GUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 104732 0.7 0.69731
Target:  5'- --cGUCGUGCCgcGUGCGCGcGCCGuUCUg -3'
miRNA:   3'- uaaCGGUACGG--UAUGUGC-CGGC-AGAa -5'
23562 3' -54.8 NC_005261.1 + 102408 0.7 0.665631
Target:  5'- --cGCCAgcgcuccuccUGCCGcUGCGCGGCCGcCUc -3'
miRNA:   3'- uaaCGGU----------ACGGU-AUGUGCCGGCaGAa -5'
23562 3' -54.8 NC_005261.1 + 6279 0.7 0.664569
Target:  5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 110796 0.7 0.664569
Target:  5'- --cGCCAaacucauUGUaaUAUGCGCGGCCGUCg- -3'
miRNA:   3'- uaaCGGU-------ACG--GUAUGUGCCGGCAGaa -5'
23562 3' -54.8 NC_005261.1 + 59839 0.71 0.633686
Target:  5'- -cUGCCAgcagagggcgGCCAUGCGCGGgaCGUCg- -3'
miRNA:   3'- uaACGGUa---------CGGUAUGUGCCg-GCAGaa -5'
23562 3' -54.8 NC_005261.1 + 92741 0.71 0.623022
Target:  5'- --aGCCG-GCCAUGCACauGGCCGUgUUc -3'
miRNA:   3'- uaaCGGUaCGGUAUGUG--CCGGCAgAA- -5'
23562 3' -54.8 NC_005261.1 + 98685 0.72 0.569987
Target:  5'- --cGCCGggGCCGgagGCGCGGCCGgagCUg -3'
miRNA:   3'- uaaCGGUa-CGGUa--UGUGCCGGCa--GAa -5'
23562 3' -54.8 NC_005261.1 + 136360 0.72 0.549052
Target:  5'- --cGCCGUGCUGgccuCGCGGCgCGUCUUc -3'
miRNA:   3'- uaaCGGUACGGUau--GUGCCG-GCAGAA- -5'
23562 3' -54.8 NC_005261.1 + 31843 0.72 0.549052
Target:  5'- --cGCCGUGCUGgccuCGCGGCgCGUCUUc -3'
miRNA:   3'- uaaCGGUACGGUau--GUGCCG-GCAGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.