Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 3' | -54.8 | NC_005261.1 | + | 37903 | 0.68 | 0.81589 |
Target: 5'- --gGCCAUGCCcUACGCGcGCCa---- -3' miRNA: 3'- uaaCGGUACGGuAUGUGC-CGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 85790 | 0.68 | 0.80677 |
Target: 5'- --cGCCGUcGCUggGCagACGGCCGUCg- -3' miRNA: 3'- uaaCGGUA-CGGuaUG--UGCCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 51803 | 0.68 | 0.80677 |
Target: 5'- --gGCCAUGCuCGUGCuGCGGCUGgugCg- -3' miRNA: 3'- uaaCGGUACG-GUAUG-UGCCGGCa--Gaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 15334 | 0.68 | 0.81589 |
Target: 5'- --aGCCGUGCaCAaACGCGGCCa---- -3' miRNA: 3'- uaaCGGUACG-GUaUGUGCCGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 109126 | 0.68 | 0.81589 |
Target: 5'- --gGCgGUGUCGUGCGCGGCCc---- -3' miRNA: 3'- uaaCGgUACGGUAUGUGCCGGcagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 106501 | 0.68 | 0.778416 |
Target: 5'- --gGCCggGCCAUcGCGCGGCCaGUUc- -3' miRNA: 3'- uaaCGGuaCGGUA-UGUGCCGG-CAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 25195 | 0.68 | 0.80677 |
Target: 5'- --cGCCAcGCCGcGCGCGGcCCGcUCUg -3' miRNA: 3'- uaaCGGUaCGGUaUGUGCC-GGC-AGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 126542 | 0.67 | 0.842128 |
Target: 5'- --cGCCucgGCCAcGCGCcGCCGUCg- -3' miRNA: 3'- uaaCGGua-CGGUaUGUGcCGGCAGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 32221 | 0.67 | 0.847991 |
Target: 5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3' miRNA: 3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 64123 | 0.67 | 0.850472 |
Target: 5'- --gGCaCGUGCC--GCGCGGCCGcCa- -3' miRNA: 3'- uaaCG-GUACGGuaUGUGCCGGCaGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 132834 | 0.67 | 0.850472 |
Target: 5'- --cGCUuucGUCG-ACGCGGCCGUCUa -3' miRNA: 3'- uaaCGGua-CGGUaUGUGCCGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 75816 | 0.67 | 0.8586 |
Target: 5'- --cGCUgGUGCCcgGCGCGGCCG-Cg- -3' miRNA: 3'- uaaCGG-UACGGuaUGUGCCGGCaGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 89401 | 0.67 | 0.8586 |
Target: 5'- -cUGCCGccgGCCuuccucggcgcGUGCGCGGCCGcCg- -3' miRNA: 3'- uaACGGUa--CGG-----------UAUGUGCCGGCaGaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 84680 | 0.67 | 0.824829 |
Target: 5'- --cGCCuggGCCGcgGCGCGGCCGa--- -3' miRNA: 3'- uaaCGGua-CGGUa-UGUGCCGGCagaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 20563 | 0.67 | 0.833578 |
Target: 5'- --gGCCcgGCCGgGCGCGGCgGggcgCUUa -3' miRNA: 3'- uaaCGGuaCGGUaUGUGCCGgCa---GAA- -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 135223 | 0.67 | 0.833578 |
Target: 5'- --gGCCAcgGCCGaGCGCGucgccGCCGUCUUu -3' miRNA: 3'- uaaCGGUa-CGGUaUGUGC-----CGGCAGAA- -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 32886 | 0.67 | 0.842128 |
Target: 5'- --gGCC-UGCCu--CACGGCCGUg-- -3' miRNA: 3'- uaaCGGuACGGuauGUGCCGGCAgaa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 8823 | 0.67 | 0.842128 |
Target: 5'- --cGCUuuauUGCgCGU-CGCGGCCGUCUc -3' miRNA: 3'- uaaCGGu---ACG-GUAuGUGCCGGCAGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 29814 | 0.67 | 0.847991 |
Target: 5'- gGUUGCCGUGCacgcaggcgcggugGCGCGGCUG-CUg -3' miRNA: 3'- -UAACGGUACGgua-----------UGUGCCGGCaGAa -5' |
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23562 | 3' | -54.8 | NC_005261.1 | + | 136738 | 0.67 | 0.847991 |
Target: 5'- -cUGCCG-GCCGcggcgguggccuucUGCGCGGCCGcgCUg -3' miRNA: 3'- uaACGGUaCGGU--------------AUGUGCCGGCa-GAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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