Results 21 - 40 of 147 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 127374 | 0.7 | 0.965041 |
Target: 5'- aGGAugucgUugGCG-GCGGCgaggaGCCCGg -3' miRNA: 3'- -CCUuuuaaAugUGCaCGCCGa----CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 63782 | 0.7 | 0.961501 |
Target: 5'- aGGuccacgUGCGCGcGCGGCUGCgUGa -3' miRNA: 3'- -CCuuuuaaAUGUGCaCGCCGACGgGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 58064 | 0.7 | 0.957721 |
Target: 5'- aGAGGGUg-ACGCGgacgGCGGCgccaggGCCCGc -3' miRNA: 3'- cCUUUUAaaUGUGCa---CGCCGa-----CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 31390 | 0.7 | 0.960393 |
Target: 5'- cGAGGAcgUGCGCGUgGUGGUgcucuacgacccgcUGCCCGg -3' miRNA: 3'- cCUUUUaaAUGUGCA-CGCCG--------------ACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 90821 | 0.7 | 0.957721 |
Target: 5'- cGGGAGuaccgcgugUGCACGggggGCGGCgccGCCCc -3' miRNA: 3'- -CCUUUuaa------AUGUGCa---CGCCGa--CGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 135907 | 0.7 | 0.960393 |
Target: 5'- cGAGGAcgUGCGCGUgGUGGUgcucuacgacccgcUGCCCGg -3' miRNA: 3'- cCUUUUaaAUGUGCA-CGCCG--------------ACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 80930 | 0.7 | 0.965041 |
Target: 5'- uGGAcGAgg-ACGuCGcGCGGCUGCUCGc -3' miRNA: 3'- -CCUuUUaaaUGU-GCaCGCCGACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 67394 | 0.7 | 0.968346 |
Target: 5'- uGGAGGAggcgUACGCGcGCgccGGCgcGCCCGg -3' miRNA: 3'- -CCUUUUaa--AUGUGCaCG---CCGa-CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 107799 | 0.7 | 0.957721 |
Target: 5'- aGGAGGGccu-CGCGcGCGGCgGCCCu -3' miRNA: 3'- -CCUUUUaaauGUGCaCGCCGaCGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 95551 | 0.69 | 0.981598 |
Target: 5'- --------cGCGCGgcugccgGCGGCgGCCCGg -3' miRNA: 3'- ccuuuuaaaUGUGCa------CGCCGaCGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 73246 | 0.69 | 0.979357 |
Target: 5'- uGGAGcaccUGCACGcgcUGCGGCgGCUCGu -3' miRNA: 3'- -CCUUuuaaAUGUGC---ACGCCGaCGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 50087 | 0.69 | 0.97692 |
Target: 5'- --cAGAUgacCACGUGCacGCUGCCCGc -3' miRNA: 3'- ccuUUUAaauGUGCACGc-CGACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 127472 | 0.69 | 0.978886 |
Target: 5'- cGGggGGUcagagucccagACGCuG-GCGGCUGCCUGc -3' miRNA: 3'- -CCuuUUAaa---------UGUG-CaCGCCGACGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 98091 | 0.69 | 0.979357 |
Target: 5'- uGGAGAAUcuggggGCGCGgcggGCGGCgagGCUgGg -3' miRNA: 3'- -CCUUUUAaa----UGUGCa---CGCCGa--CGGgC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 64773 | 0.69 | 0.974278 |
Target: 5'- aGGggGGgcgcgcggACGCGgacGCGGCcgGCCUGg -3' miRNA: 3'- -CCuuUUaaa-----UGUGCa--CGCCGa-CGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 60405 | 0.69 | 0.979357 |
Target: 5'- aGGggGGgcgguggUGCugGgGCGGCaGCUCGg -3' miRNA: 3'- -CCuuUUaa-----AUGugCaCGCCGaCGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 94208 | 0.69 | 0.979357 |
Target: 5'- --------cGCGCG-GCGGCcGCCCGc -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 41273 | 0.69 | 0.981598 |
Target: 5'- --------cGCGCccgGCGGCUGCCCc -3' miRNA: 3'- ccuuuuaaaUGUGca-CGCCGACGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 67176 | 0.69 | 0.981598 |
Target: 5'- --------cGCGCG-GCGGCUgGCCCa -3' miRNA: 3'- ccuuuuaaaUGUGCaCGCCGA-CGGGc -5' |
|||||||
23562 | 5' | -49.5 | NC_005261.1 | + | 14795 | 0.69 | 0.981598 |
Target: 5'- -------aUGCGCGagcUGCGGCUgcgGCCCGu -3' miRNA: 3'- ccuuuuaaAUGUGC---ACGCCGA---CGGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home