miRNA display CGI


Results 61 - 80 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23562 5' -49.5 NC_005261.1 + 134429 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 73533 0.68 0.985526
Target:  5'- -------gUGCGCG-GCGGCgGCCCc -3'
miRNA:   3'- ccuuuuaaAUGUGCaCGCCGaCGGGc -5'
23562 5' -49.5 NC_005261.1 + 8812 0.68 0.985526
Target:  5'- gGGAuaGAAUacgcuuuaUUGCGCGUcGCGGCcgucucacaGCCCGg -3'
miRNA:   3'- -CCU--UUUA--------AAUGUGCA-CGCCGa--------CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 108550 0.68 0.983651
Target:  5'- ---------cCACGUGCGGCagcGCCCa -3'
miRNA:   3'- ccuuuuaaauGUGCACGCCGa--CGGGc -5'
23562 5' -49.5 NC_005261.1 + 80676 0.68 0.983651
Target:  5'- cGGAGccgg-GCGCGUGCGaCgugUGCCCGu -3'
miRNA:   3'- -CCUUuuaaaUGUGCACGCcG---ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 68955 0.68 0.983651
Target:  5'- cGGGGucg--GCGCGgGCGGCUcGCCgGg -3'
miRNA:   3'- -CCUUuuaaaUGUGCaCGCCGA-CGGgC- -5'
23562 5' -49.5 NC_005261.1 + 67500 0.68 0.983454
Target:  5'- cGAGGAggcGCACGUGCuggacgugcucucGGCcgUGCCCGc -3'
miRNA:   3'- cCUUUUaaaUGUGCACG-------------CCG--ACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 44368 0.68 0.988779
Target:  5'- uGGAAGGagUGCGCGcgccucGUGGaCUGCUCGg -3'
miRNA:   3'- -CCUUUUaaAUGUGCa-----CGCC-GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 29206 0.68 0.988779
Target:  5'- -------cUGCGCGccacgGCGGCguucgGCCCGg -3'
miRNA:   3'- ccuuuuaaAUGUGCa----CGCCGa----CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 54638 0.68 0.988779
Target:  5'- cGGAGAGcg-ACGCGcUGCuGGCgGCCgCGg -3'
miRNA:   3'- -CCUUUUaaaUGUGC-ACG-CCGaCGG-GC- -5'
23562 5' -49.5 NC_005261.1 + 98612 0.68 0.988779
Target:  5'- gGGAGGGUcUGCGCGacggggGCGGCggggGCgCGc -3'
miRNA:   3'- -CCUUUUAaAUGUGCa-----CGCCGa---CGgGC- -5'
23562 5' -49.5 NC_005261.1 + 22010 0.68 0.989355
Target:  5'- uGGAAcGUgaugUACACGcuccuggagcgcuucUGCGGCgacgcGCCCa -3'
miRNA:   3'- -CCUUuUAa---AUGUGC---------------ACGCCGa----CGGGc -5'
23562 5' -49.5 NC_005261.1 + 37188 0.68 0.990176
Target:  5'- cGGAcGAgcacUACGcGCGGCUGCCgGc -3'
miRNA:   3'- -CCUuUUaaauGUGCaCGCCGACGGgC- -5'
23562 5' -49.5 NC_005261.1 + 29912 0.68 0.985526
Target:  5'- --------cGCGCGaGCGGCUGCgCGa -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGACGgGC- -5'
23562 5' -49.5 NC_005261.1 + 68692 0.68 0.985526
Target:  5'- uGGggGccg-GCGCGgacgacgGCGGCgccgGCCCu -3'
miRNA:   3'- -CCuuUuaaaUGUGCa------CGCCGa---CGGGc -5'
23562 5' -49.5 NC_005261.1 + 51801 0.67 0.994287
Target:  5'- uGGAccaccugGCgaugGCGUGCGGguuCUGCCCGc -3'
miRNA:   3'- -CCUuuuaaa-UG----UGCACGCC---GACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 89190 0.67 0.994457
Target:  5'- -------gUGCuCG-GCGGCUGCCUGc -3'
miRNA:   3'- ccuuuuaaAUGuGCaCGCCGACGGGC- -5'
23562 5' -49.5 NC_005261.1 + 107325 0.67 0.994457
Target:  5'- cGGGAGGg--GC-CGgGCGGCcccaGCCCGa -3'
miRNA:   3'- -CCUUUUaaaUGuGCaCGCCGa---CGGGC- -5'
23562 5' -49.5 NC_005261.1 + 122448 0.67 0.994457
Target:  5'- --------cGCGCGgGCGGC-GCCCGc -3'
miRNA:   3'- ccuuuuaaaUGUGCaCGCCGaCGGGC- -5'
23562 5' -49.5 NC_005261.1 + 15032 0.67 0.994457
Target:  5'- ------cUUACGCG-GCGGCUggguccGCCCa -3'
miRNA:   3'- ccuuuuaAAUGUGCaCGCCGA------CGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.